Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2724 ATGGATTTCAATAGTAATTCTGTTTCATCAAATTTGCCACCAAATTCCATGCCAATGCCTCCTTATCCTATGGATCAGTATCGTCAAGAAGAGACAGAGGTGGAGAAACTTCGATTATTCTGGCAGGAACAGTTATTTAGTATTCAATCCACTCAAGCATTGAGGAGCCAGCAACCCTTGCCACTGGCTCGAATCAGAAGGATCATCAAAACAGACTCGGGGGTGCAGATGATCAGTGCTGAAACTCCAATATTGATGGCAAAAGCATGTGAGATTTTCATTCAGGAGCTCACCTTTCGCGCATGGATGCTTGCTGAAGAGAGCAATAAGCGTACGGTGAAACCTTGTGACATTGCCAAGGCCATTTTGCAAACTGAAGTCTTTCATTTCCTTAGTGATGTTGTTCCAAGTGACCTCCTCCGATTCTGTGCTTTTGATACCAAGCATGAAGAGAATGCTGGAAACATTGCAGAAGGAAGCCAGGCATCCCTGCCTCACCCTGCTGGCTTAATGGGAAATCCTATGATGAATATGGGCAGTGACCAGGTGGCAAGAAATCACCTGATTCCTCAATCTTACATGATGCAGCCACCCTTTATGCCTTCTGATCAATTGCCTTACAATTGTCACACCAAGTCAAAGTAG 645 0.4434 MDFNSNSVSSNLPPNSMPMPPYPMDQYRQEETEVEKLRLFWQEQLFSIQSTQALRSQQPLPLARIRRIIKTDSGVQMISAETPILMAKACEIFIQELTFRAWMLAEESNKRTVKPCDIAKAILQTEVFHFLSDVVPSDLLRFCAFDTKHEENAGNIAEGSQASLPHPAGLMGNPMMNMGSDQVARNHLIPQSYMMQPPFMPSDQLPYNCHTKSK* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2724 214 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 22 163 IPR027170 GO:0003700|GO:0006355|GO:0016602
Apr4g2724 214 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 163 - -
Apr4g2724 214 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g2724 214 Gene3D Histone, subunit A 22 137 IPR009072 GO:0046982
Apr4g2724 214 SUPERFAMILY Histone-fold 41 131 IPR009072 GO:0046982
Apr4g2724 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 122 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2724 Apr-Chr4 35835126 35837371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2724 40 197 CCAAT-HAP5 Transcription Factor Family AT1G08970 41.718 2.04e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr4g2724 CBFD_NFYB_HMF 7.8e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2724 - K08066 gsj:114370134 154.451