Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g2719 | ATGGATTCCCATTCCCAATCTCAACAACAAACCCTAGACTCCACCCAGTTGTACCTCACCGCTGTCCAAACCCTCCAATCCCAGCCCTCTCCCGCACCCTCGCCCTTCCCCCCACTCCCTCCCTCCCTTCCCCACTCCAAACTCATCCCCAAAACCCGCTTCCTCGTCGACGCATTCCGCCATGCCGGCGACTACTCCCTCTCCTACTTCCTCTCCCACTTCCACTCCGACCACTATACCGGCCTCTCCTCCACCTGGTCTCGCGGCATCATCTTCTGTTCTCCCGTCACCGCTCGCCTCCTCCTCCAAATCCTCAACGTCCCTTCTCCCTTCGTCTTCCCTCTCCCTCTCCGTCAACCTCTCATAATCGACGGCTCCGATGTCACCCTCGTTGACGCCAATCACTGCCCCGGCGCTGTCCAATTCCTCTTCAAAGTTCCCCGCGCCGATGGAACCTTCCACAGGTACGTTCACACCGGCGATTTCAGGTTTTGTAAGTCCATGATTTTGGAACCCGCTCTTGCTCATTTTATTGGTGCTGATGCTGTGTTTTTGGACACTACCTATTGTAATCCTAAGTTTGTTTTCCCTTCGCAAGATGAGAGTGTTGATTATGTTGCCGGTGTTGTGGAGAGGGTTGAGCGTGAGTGTGATGGTAGGGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGGAAGGAGAGGATTTTGCTCGAGCTTGCAAAGAGGTTTAAGCGGAAGATACATGTGGATGCTAGGAAAATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCAGCGAGTTTACGGTGGATGGATTGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTGAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCCAAGGTTGTGGGTTTTGTTCCCACTGGATGGACCTATGAAGTGAAGCGCAACAGATTTGCGGTTAAGTCGAAGGATTCATTACAGATTCATCTTGTGCCTTATAGTGAGCATTCGAATTATGATGAGCTCAGGGAGTATGTGAAATTTTTGAAACCGAAGCATGTTGTTCCGACCGTGGGTTTGGATGTTGAGAAAAGTGACAGTAAACATGCTATCAAAATGAGGAAGTATTTTGCGGGGTTGGTTGATGAGACGGCCAACAAGCAGGAGTTCTTGAGGGGTTTTCATGGTGGCTCTGGTGAAGTGGATTTCAAGGTTGAGAATGATGTTAGTGATGGTCTGAAACAGGAGCAATGCACAGAGAAAGAAGTCAAACCACCAGAAGCGGAAGGTGATAAAAGTATTAATCCAGAAGTTGCTGAGAGTTTGTCCTCATTTACGAGAGAAACTTGCATGCAAGATCACACTTTGCTGAATGATGAAGAAAAAGAGAAAATCATTCAAGAAATTAGTTGTTGTTTGCCCACATGGGTCACCCGAAACCAGGTGTTAGATCTTATCAGCATCTCAGGGAGCAATATCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACGAGCAAGTGAATACCTTTCAAACTTCTGATTCAACAACCAAGTGCTGCTTATTAAATGACCCTGACTCGCTCTCAAAATCATGCCTTAATACAAACAACACTTACAAAAATGTTGACGTTTTTCCAAGTCAAGATTCTAAATTAAATAACTTGAGGCATACAGTACCGAGTCCCATTTCTCCTGCTAAAAGGAAGAGAAGTAGTGACAGTAAGCCAAACAAAAAAGTCAAAGTCAAAGTCAAAGCAAAATCTGAATCAAGTGGTTCAAAGCAGTCCACGATAACAAGTTTCTTCAGTAAAGCAATTCCTGACATGCCTGGTGGTACTCAATCTGATAATTTTGGACCCAAACTTGACCAAAGCTCTAAAGTTGAAGACTTGTTGCCAACTGATGTTGGAACAATGTACAAGAATGAGATTGATCAATTTATGCAAATAATAAATGGGGATGAATCATTAAAAAAATATGCCATTGCTGTAATTGAGAAGACCGAAGGAGATATCAATAAGGCACTGGACATGTATTACTCTAATTCTGATAAACTTTGTGAAAATGAAATACCAGTTCAAGTGGAGTGCGAAATTGATAGACCCGTAGTGAAGAAATGTGTGTCAGAGGAAGTGAGAGTTATACCTGATATTTGTGAGCAGAAAGTCTTTAAAGATAATGTAGATACTACTCATTTATCTCTACCCTGTGAGAAATACAACCCTAAAGAACATGCATGTTGGAGTGATGGACAGCCTGCACCATATTTACATCTTGCACGAACCTTCAACTTGCTTGAGGGTGAGAAAGGAAAGATAAAAGCTACTTCATTGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCCGCAGATGTGCTTCCTGCTGTGTATCTGTGCACAAACAAAATTGCAGCAGACCATGAAAATACGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATTTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGGTTGCTTGCACCACCTACACCACTTCTAATTAACGATGTTTTCTCTGCATTACAAAAGATAAGTGTACAAACAGGCAATGGAAGCACAATTCGGAAGAAAGGCATAATTGTTCATCTCATGCGTTCCTGTCGTGAGAAGGAGATAAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTCTTATGAATTCTTGCCCTAGTTTGTTTGAAGAATGGACTGCAGAAAATCTGAAGGAGAAGCTTCAGGTCCTTTCTATGGCAGTTGTTGAAGCATACAACATACTTCCAAATTTGGATCTCTTAGTCCCATCCCTCATGAACAAAGGCATTCATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTTGCAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTATTCAAGAAATGGGGATGAATCAACTTCAAGATTTCCTGATCTGATTGACATAATTAAGGAATCCTCCAAGCCTGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGGTATTGACAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGCCGGAGAGGTGGCAAAGATACGTTAATTACTACAAAGAGCATCAAGGTGGATATTTGCATCTTTGTCTTTGACATCATGTTCGCAAATGGAGAACAGTTATTGGGTTTTCCTCTCCGCCTTAGACGGAAGTACCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACAATTGAAGCCGATGATGCTTGCATAACCTGTGAAGCCACATTAGCTAAGGTAAATGCTTTCTTGGAAGATGCATTTCACTCTTCATGTGAAGGAATTATGGTGAAATCATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGATAAATGGTTAAAGGTTAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTACATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAGCCACCATATTATCATACAGGAGAGGCACCAGACATGTGGTTTGGTCCACAACTCGTTTGGGAAATAAGGGGAGCAGACTTTACAGTATCTCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCGTCTCGTGGTATCTCAATCAGATTTCCAAGATTTATTCGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACGGCTGCTGATATAGTTGAAATGTTTCATTCCCAGACTAGGAAGATGGATGTCCCTGCAGCTGAAGATTGA | 4200 | 0.4229 | MDSHSQSQQQTLDSTQLYLTAVQTLQSQPSPAPSPFPPLPPSLPHSKLIPKTRFLVDAFRHAGDYSLSYFLSHFHSDHYTGLSSTWSRGIIFCSPVTARLLLQILNVPSPFVFPLPLRQPLIIDGSDVTLVDANHCPGAVQFLFKVPRADGTFHRYVHTGDFRFCKSMILEPALAHFIGADAVFLDTTYCNPKFVFPSQDESVDYVAGVVERVERECDGRVLFLVATYVVGKERILLELAKRFKRKIHVDARKMEVLRVLGYGESSEFTVDGLESNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNRFAVKSKDSLQIHLVPYSEHSNYDELREYVKFLKPKHVVPTVGLDVEKSDSKHAIKMRKYFAGLVDETANKQEFLRGFHGGSGEVDFKVENDVSDGLKQEQCTEKEVKPPEAEGDKSINPEVAESLSSFTRETCMQDHTLLNDEEKEKIIQEISCCLPTWVTRNQVLDLISISGSNIVEAVSNFYERETEFHEQVNTFQTSDSTTKCCLLNDPDSLSKSCLNTNNTYKNVDVFPSQDSKLNNLRHTVPSPISPAKRKRSSDSKPNKKVKVKVKAKSESSGSKQSTITSFFSKAIPDMPGGTQSDNFGPKLDQSSKVEDLLPTDVGTMYKNEIDQFMQIINGDESLKKYAIAVIEKTEGDINKALDMYYSNSDKLCENEIPVQVECEIDRPVVKKCVSEEVRVIPDICEQKVFKDNVDTTHLSLPCEKYNPKEHACWSDGQPAPYLHLARTFNLLEGEKGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENTELNIGGSLVTAALEEACGTNRLKIREIYNKFGDLGDVAQECRQTQRLLAPPTPLLINDVFSALQKISVQTGNGSTIRKKGIIVHLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAHAVLMNSCPSLFEEWTAENLKEKLQVLSMAVVEAYNILPNLDLLVPSLMNKGIHFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSIRVYSRNGDESTSRFPDLIDIIKESSKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRRRGGKDTLITTKSIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACITCEATLAKVNAFLEDAFHSSCEGIMVKSLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYHTGEAPDMWFGPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRCVSDRNPEECSTAADIVEMFHSQTRKMDVPAAED* | 1400 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g2719 | 1399 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 1126 | 1273 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Apr4g2719 | 1399 | Gene3D | - | 1240 | 1397 | IPR012340 | - | |
| Apr4g2719 | 1399 | Gene3D | - | 49 | 368 | IPR036866 | - | |
| Apr4g2719 | 1399 | Pfam | DNA repair metallo-beta-lactamase | 265 | 369 | IPR011084 | - | |
| Apr4g2719 | 1399 | SUPERFAMILY | Metallo-hydrolase/oxidoreductase | 51 | 369 | IPR036866 | - | |
| Apr4g2719 | 1399 | Pfam | ATP dependent DNA ligase C terminal region | 1261 | 1369 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
| Apr4g2719 | 1399 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 1039 | 1047 | IPR016059 | GO:0003909 | |
| Apr4g2719 | 1399 | PANTHER | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED | 6 | 770 | - | - | |
| Apr4g2719 | 1399 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 971 | 1237 | - | - | |
| Apr4g2719 | 1399 | CDD | OBF_DNA_ligase_I | 1244 | 1387 | - | - |
Showing 1 to 10 of 25 entries
Duplication type information
Functional genes information
Pathway information
Event-related genes