Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2719 ATGGATTCCCATTCCCAATCTCAACAACAAACCCTAGACTCCACCCAGTTGTACCTCACCGCTGTCCAAACCCTCCAATCCCAGCCCTCTCCCGCACCCTCGCCCTTCCCCCCACTCCCTCCCTCCCTTCCCCACTCCAAACTCATCCCCAAAACCCGCTTCCTCGTCGACGCATTCCGCCATGCCGGCGACTACTCCCTCTCCTACTTCCTCTCCCACTTCCACTCCGACCACTATACCGGCCTCTCCTCCACCTGGTCTCGCGGCATCATCTTCTGTTCTCCCGTCACCGCTCGCCTCCTCCTCCAAATCCTCAACGTCCCTTCTCCCTTCGTCTTCCCTCTCCCTCTCCGTCAACCTCTCATAATCGACGGCTCCGATGTCACCCTCGTTGACGCCAATCACTGCCCCGGCGCTGTCCAATTCCTCTTCAAAGTTCCCCGCGCCGATGGAACCTTCCACAGGTACGTTCACACCGGCGATTTCAGGTTTTGTAAGTCCATGATTTTGGAACCCGCTCTTGCTCATTTTATTGGTGCTGATGCTGTGTTTTTGGACACTACCTATTGTAATCCTAAGTTTGTTTTCCCTTCGCAAGATGAGAGTGTTGATTATGTTGCCGGTGTTGTGGAGAGGGTTGAGCGTGAGTGTGATGGTAGGGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGGAAGGAGAGGATTTTGCTCGAGCTTGCAAAGAGGTTTAAGCGGAAGATACATGTGGATGCTAGGAAAATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCAGCGAGTTTACGGTGGATGGATTGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTGAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCCAAGGTTGTGGGTTTTGTTCCCACTGGATGGACCTATGAAGTGAAGCGCAACAGATTTGCGGTTAAGTCGAAGGATTCATTACAGATTCATCTTGTGCCTTATAGTGAGCATTCGAATTATGATGAGCTCAGGGAGTATGTGAAATTTTTGAAACCGAAGCATGTTGTTCCGACCGTGGGTTTGGATGTTGAGAAAAGTGACAGTAAACATGCTATCAAAATGAGGAAGTATTTTGCGGGGTTGGTTGATGAGACGGCCAACAAGCAGGAGTTCTTGAGGGGTTTTCATGGTGGCTCTGGTGAAGTGGATTTCAAGGTTGAGAATGATGTTAGTGATGGTCTGAAACAGGAGCAATGCACAGAGAAAGAAGTCAAACCACCAGAAGCGGAAGGTGATAAAAGTATTAATCCAGAAGTTGCTGAGAGTTTGTCCTCATTTACGAGAGAAACTTGCATGCAAGATCACACTTTGCTGAATGATGAAGAAAAAGAGAAAATCATTCAAGAAATTAGTTGTTGTTTGCCCACATGGGTCACCCGAAACCAGGTGTTAGATCTTATCAGCATCTCAGGGAGCAATATCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACGAGCAAGTGAATACCTTTCAAACTTCTGATTCAACAACCAAGTGCTGCTTATTAAATGACCCTGACTCGCTCTCAAAATCATGCCTTAATACAAACAACACTTACAAAAATGTTGACGTTTTTCCAAGTCAAGATTCTAAATTAAATAACTTGAGGCATACAGTACCGAGTCCCATTTCTCCTGCTAAAAGGAAGAGAAGTAGTGACAGTAAGCCAAACAAAAAAGTCAAAGTCAAAGTCAAAGCAAAATCTGAATCAAGTGGTTCAAAGCAGTCCACGATAACAAGTTTCTTCAGTAAAGCAATTCCTGACATGCCTGGTGGTACTCAATCTGATAATTTTGGACCCAAACTTGACCAAAGCTCTAAAGTTGAAGACTTGTTGCCAACTGATGTTGGAACAATGTACAAGAATGAGATTGATCAATTTATGCAAATAATAAATGGGGATGAATCATTAAAAAAATATGCCATTGCTGTAATTGAGAAGACCGAAGGAGATATCAATAAGGCACTGGACATGTATTACTCTAATTCTGATAAACTTTGTGAAAATGAAATACCAGTTCAAGTGGAGTGCGAAATTGATAGACCCGTAGTGAAGAAATGTGTGTCAGAGGAAGTGAGAGTTATACCTGATATTTGTGAGCAGAAAGTCTTTAAAGATAATGTAGATACTACTCATTTATCTCTACCCTGTGAGAAATACAACCCTAAAGAACATGCATGTTGGAGTGATGGACAGCCTGCACCATATTTACATCTTGCACGAACCTTCAACTTGCTTGAGGGTGAGAAAGGAAAGATAAAAGCTACTTCATTGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCCGCAGATGTGCTTCCTGCTGTGTATCTGTGCACAAACAAAATTGCAGCAGACCATGAAAATACGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATTTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGGTTGCTTGCACCACCTACACCACTTCTAATTAACGATGTTTTCTCTGCATTACAAAAGATAAGTGTACAAACAGGCAATGGAAGCACAATTCGGAAGAAAGGCATAATTGTTCATCTCATGCGTTCCTGTCGTGAGAAGGAGATAAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTCTTATGAATTCTTGCCCTAGTTTGTTTGAAGAATGGACTGCAGAAAATCTGAAGGAGAAGCTTCAGGTCCTTTCTATGGCAGTTGTTGAAGCATACAACATACTTCCAAATTTGGATCTCTTAGTCCCATCCCTCATGAACAAAGGCATTCATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTTGCAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTATTCAAGAAATGGGGATGAATCAACTTCAAGATTTCCTGATCTGATTGACATAATTAAGGAATCCTCCAAGCCTGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGGTATTGACAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGCCGGAGAGGTGGCAAAGATACGTTAATTACTACAAAGAGCATCAAGGTGGATATTTGCATCTTTGTCTTTGACATCATGTTCGCAAATGGAGAACAGTTATTGGGTTTTCCTCTCCGCCTTAGACGGAAGTACCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACAATTGAAGCCGATGATGCTTGCATAACCTGTGAAGCCACATTAGCTAAGGTAAATGCTTTCTTGGAAGATGCATTTCACTCTTCATGTGAAGGAATTATGGTGAAATCATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGATAAATGGTTAAAGGTTAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTACATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAGCCACCATATTATCATACAGGAGAGGCACCAGACATGTGGTTTGGTCCACAACTCGTTTGGGAAATAAGGGGAGCAGACTTTACAGTATCTCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCGTCTCGTGGTATCTCAATCAGATTTCCAAGATTTATTCGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACGGCTGCTGATATAGTTGAAATGTTTCATTCCCAGACTAGGAAGATGGATGTCCCTGCAGCTGAAGATTGA 4200 0.4229 MDSHSQSQQQTLDSTQLYLTAVQTLQSQPSPAPSPFPPLPPSLPHSKLIPKTRFLVDAFRHAGDYSLSYFLSHFHSDHYTGLSSTWSRGIIFCSPVTARLLLQILNVPSPFVFPLPLRQPLIIDGSDVTLVDANHCPGAVQFLFKVPRADGTFHRYVHTGDFRFCKSMILEPALAHFIGADAVFLDTTYCNPKFVFPSQDESVDYVAGVVERVERECDGRVLFLVATYVVGKERILLELAKRFKRKIHVDARKMEVLRVLGYGESSEFTVDGLESNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNRFAVKSKDSLQIHLVPYSEHSNYDELREYVKFLKPKHVVPTVGLDVEKSDSKHAIKMRKYFAGLVDETANKQEFLRGFHGGSGEVDFKVENDVSDGLKQEQCTEKEVKPPEAEGDKSINPEVAESLSSFTRETCMQDHTLLNDEEKEKIIQEISCCLPTWVTRNQVLDLISISGSNIVEAVSNFYERETEFHEQVNTFQTSDSTTKCCLLNDPDSLSKSCLNTNNTYKNVDVFPSQDSKLNNLRHTVPSPISPAKRKRSSDSKPNKKVKVKVKAKSESSGSKQSTITSFFSKAIPDMPGGTQSDNFGPKLDQSSKVEDLLPTDVGTMYKNEIDQFMQIINGDESLKKYAIAVIEKTEGDINKALDMYYSNSDKLCENEIPVQVECEIDRPVVKKCVSEEVRVIPDICEQKVFKDNVDTTHLSLPCEKYNPKEHACWSDGQPAPYLHLARTFNLLEGEKGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENTELNIGGSLVTAALEEACGTNRLKIREIYNKFGDLGDVAQECRQTQRLLAPPTPLLINDVFSALQKISVQTGNGSTIRKKGIIVHLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAHAVLMNSCPSLFEEWTAENLKEKLQVLSMAVVEAYNILPNLDLLVPSLMNKGIHFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSIRVYSRNGDESTSRFPDLIDIIKESSKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRRRGGKDTLITTKSIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACITCEATLAKVNAFLEDAFHSSCEGIMVKSLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYHTGEAPDMWFGPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRCVSDRNPEECSTAADIVEMFHSQTRKMDVPAAED* 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2719 1399 ProSiteProfiles ATP-dependent DNA ligase family profile. 1126 1273 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Apr4g2719 1399 Gene3D - 1240 1397 IPR012340 -
Apr4g2719 1399 Gene3D - 49 368 IPR036866 -
Apr4g2719 1399 Pfam DNA repair metallo-beta-lactamase 265 369 IPR011084 -
Apr4g2719 1399 SUPERFAMILY Metallo-hydrolase/oxidoreductase 51 369 IPR036866 -
Apr4g2719 1399 Pfam ATP dependent DNA ligase C terminal region 1261 1369 IPR012309 GO:0003910|GO:0006281|GO:0006310
Apr4g2719 1399 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1039 1047 IPR016059 GO:0003909
Apr4g2719 1399 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 6 770 - -
Apr4g2719 1399 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 971 1237 - -
Apr4g2719 1399 CDD OBF_DNA_ligase_I 1244 1387 - -
Apr4g2719 1399 Pfam ATP dependent DNA ligase domain 1015 1235 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Apr4g2719 1399 MobiDBLite consensus disorder prediction 426 446 - -
Apr4g2719 1399 Gene3D - 1026 1239 - -
Apr4g2719 1399 PANTHER DNA LIGASE 6 770 - -
Apr4g2719 1399 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 749 998 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr4g2719 1399 MobiDBLite consensus disorder prediction 564 605 - -
Apr4g2719 1399 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 827 1385 IPR000977 GO:0003910|GO:0005524|GO:0071897
Apr4g2719 1399 Pfam DNA ligase N terminus 769 945 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr4g2719 1399 Gene3D - 747 1017 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Apr4g2719 1399 Gene3D - 195 346 - -
Apr4g2719 1399 CDD Adenylation_DNA_ligase_I_Euk 1006 1238 - -
Apr4g2719 1399 SUPERFAMILY Nucleic acid-binding proteins 1244 1388 IPR012340 -
Apr4g2719 1399 MobiDBLite consensus disorder prediction 426 444 - -
Apr4g2719 1399 Gene3D DNA ligase/mRNA capping enzyme 1044 1175 - -
Apr4g2719 1399 CDD SNM1A-1C-like_MBL-fold 47 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2719 Apr-Chr4 35786428 35798780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2719 754 1388 Core DNA Replication Machinery Family AT1G08130 38.654 1.28e-162 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2719 - - gmx:100807673 2323.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2719 4 35786428 35798780 Apr4g2719 4 35786428 35798780 ECH