Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2716 ATGAATGAGCAAATTATGTCATCTCCTAATAGATTGGTACAATGTCGAATATGCCACGATGAGGATGAAGACTCAAACATGGACACACCCTGTTCTTGTTGTGGCACCTTGAAGTTTGCACATCGAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGCGATACTACCTGTGAGATTTGTCAACAGCAACTTAAGCCCGGGTATACTCTTCCCCCACCACCTCCCCTATTCCATTACGGTGGTTCTTCAATAAACTTTGGAGGGAATTGGAACATTTCAAGAAGTGATCTTCATAATCCTGAGTTAATTGCAATGTTTACTGCTAACCATGAATTCCTAGACCTTGACTTAGAATATTTAGCACCCTCTACAAGGAGCCTAAAATGCTGCCGCATTGTTGCCATTATTTTTATTGTTCTTCTTGTTTTACGCCATACACTTCCAATCATATTTATACTCAGTGGAGAAGGAGAGTATTCATTGACAGTGATTATGTTAGTAGTGTTGAGAATAACTGTACCAATGTATATAATGTTTAAAGCTATTGTTGCAATCCAACGGTTTCAATACCAGGATCATCATTCTCCTTTGCAATCACATGAGGAAAATGACACAAGACAGTCTCAATTACGTGTCATTCACATTCAGTGA 651 0.3871 MNEQIMSSPNRLVQCRICHDEDEDSNMDTPCSCCGTLKFAHRKCVQRWCNEKGDTTCEICQQQLKPGYTLPPPPPLFHYGGSSINFGGNWNISRSDLHNPELIAMFTANHEFLDLDLEYLAPSTRSLKCCRIVAIIFIVLLVLRHTLPIIFILSGEGEYSLTVIMLVVLRITVPMYIMFKAIVAIQRFQYQDHHSPLQSHEENDTRQSQLRVIHIQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2716 216 SMART ringv_2 14 61 IPR011016 GO:0008270
Apr4g2716 216 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Apr4g2716 216 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 2 209 IPR033275 -
Apr4g2716 216 CDD RING_CH-C4HC3_MARCH 15 61 - -
Apr4g2716 216 Pfam Protein of unknown function (DUF3675) 66 182 IPR022143 -
Apr4g2716 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 2 209 - -
Apr4g2716 216 SUPERFAMILY RING/U-box 13 64 - -
Apr4g2716 216 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Apr4g2716 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2716 Apr-Chr4 35756239 35758874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2716 15 61 C3H Transcription Factor Family AT2G37950 50.000 7.81e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2716 - - gmx:100806609 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2716 4 35756239 35758874 Apr4g2716 4 35756239 35758874 ECH