Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2689 ATGGCCGCCGGCATGGACATGTCGCTTGACGACCTTATCAAGAGGTCCTCCGCCGCCGTCGCCGCTCGCCGGCGATCCAACCATTCCGGTCCTGAGCGCCGGTTCACGGTTCACAATGCGGGCAGAACGACGCCGTACGGCATCCCTCAGGTAAGGCAAGTGTGGCAACAGAGCATGGTTACGGGAATGGTTTTGGGTGAGGACGGTGCCACTAAGACTGAAAGCGGCGCCAAACTCTATATATCTAACTTAGATTATGGGGTTTCCAACGAAGATATTAAGCTGCTCTTCGCTGAAGAGGGTGAGTTGAAAAGATACTCCGTTCATTATGACAAGAGTGGGAGATCAAAGGGAACAGCAGAAGTTGTCTTTGTGAGGCAGTCTGATGCTTTAGCAGCCATCAGGAAATACAATAATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTTGTTGGAACAAGTTTGGTTAATCCTACTGTTGTGCCGCTTGGTCAAAGTAGCTTACTGGGAAAACCAAATGATGATGTCATTGTAAGCGAACGAGGAAGGGTTGGAGGGAGCAGGTTCCACAGTGGCATAGGAAAAGGTCACCTTCCAAGGGATCATATAGAAGAGGACGATACTCGAAAGACATCTTTTGGAGATCTTGATCATAACTTGGAGAGGTATCACCGCTTTCCGAGGGGCCACGCAGAAGTGAAGGGCCATACTCGAAAGGTGTCTGTTAAAGATCTTGATGATGACTTGGAGAGGTATCACTTAGAGGCTATGCAGAAAAAAAATGGAAAGTGA 795 0.4843 MAAGMDMSLDDLIKRSSAAVAARRRSNHSGPERRFTVHNAGRTTPYGIPQVRQVWQQSMVTGMVLGEDGATKTESGAKLYISNLDYGVSNEDIKLLFAEEGELKRYSVHYDKSGRSKGTAEVVFVRQSDALAAIRKYNNMRLDGKPLQIELVGTSLVNPTVVPLGQSSLLGKPNDDVIVSERGRVGGSRFHSGIGKGHLPRDHIEEDDTRKTSFGDLDHNLERYHRFPRGHAEVKGHTRKVSVKDLDDDLERYHLEAMQKKNGK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2689 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 147 IPR000504 GO:0003723
Apr4g2689 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Apr4g2689 264 CDD RRM_THOC4 77 151 - -
Apr4g2689 264 SUPERFAMILY RNA-binding domain, RBD 73 152 IPR035979 GO:0003676
Apr4g2689 264 SMART rrm1_1 78 150 IPR000504 GO:0003723
Apr4g2689 264 PANTHER THO COMPLEX SUBUNIT 4A-LIKE ISOFORM X1 1 225 - -
Apr4g2689 264 MobiDBLite consensus disorder prediction 22 42 - -
Apr4g2689 264 Gene3D - 66 210 IPR012677 -
Apr4g2689 264 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2689 Apr-Chr4 35531124 35533050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2689 68 152 Eukaryotic Initiation Factors Gene Family AT2G23350 38.824 1.05e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2689 K12881 - gmx:100785926 317.39