Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2685 ATGAACATGAAAGAGATGGTGAACATGATGGAATGGCAGAAGCAGCGTTGGCAACCCAACGGGAACGCGGAAATGATGTACGTCAAAGTTATGACCGATGAACAACTCGAAACTCTGCGCAAACAAATTGCTGTTTACGCAACAATTTGCGAACAACTCATCGAGATGCACAAAACCATCTCTGCTCATCAAGATCTCGCAGGGATTAGGCTAGGAAATATGTATTGTGATCCATTGGTGGCGTCTGCTGGCCATAAATTAACTTCGAGGCAGCGGTGGACGCCGACGGCGGTGCAGCTTCAGATTCTGGAAAGGATATTTGATCAGGGGACTGGGACTCCCAGCAAGGAGAAGATCAAGGAGATAACTGCTGAACTCAGCCAGCATGGCCAAATTTCTGAGACTAATGTTTATAATTGGTTCCAGAACAGGCGTGCTCGCTCCAAGAGAAAGCAGCAGAATGTGGCATCCAGTGTTCATACTGAATCAGAAATGGAGGCTGAGGTTGATTCCAAGGATAAGAAGACGAAACCGGACGAATTTCAGTCCCGGCCTAGTGTTACTATGGGGCCTGCTGATAATTTGTGCTTCCAGAATCCTAATGATTTGCAGTACTTGAATCCAGAGTCTAATAAACCAGATTCTGTATTCTCATCTGATGGTAGTCTAAGATCCACTCATGTGCCTGCTTTTGATGGGATGCTATCAAACTCAAGGAGTGACTATCTTACCGGAAAAATGGAAGCACCTGAGAGCTACAACTTATACCAGCCAGCAGGCGACTACAACATGGCAGGTTGA 801 0.4607 MNMKEMVNMMEWQKQRWQPNGNAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKTISAHQDLAGIRLGNMYCDPLVASAGHKLTSRQRWTPTAVQLQILERIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQNVASSVHTESEMEAEVDSKDKKTKPDEFQSRPSVTMGPADNLCFQNPNDLQYLNPESNKPDSVFSSDGSLRSTHVPAFDGMLSNSRSDYLTGKMEAPESYNLYQPAGDYNMAG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2685 266 Gene3D - 91 158 - -
Apr4g2685 266 Pfam Homeodomain 90 150 IPR001356 GO:0003677
Apr4g2685 266 SUPERFAMILY Homeodomain-like 86 153 IPR009057 -
Apr4g2685 266 MobiDBLite consensus disorder prediction 149 221 - -
Apr4g2685 266 CDD homeodomain 90 152 IPR001356 GO:0003677
Apr4g2685 266 MobiDBLite consensus disorder prediction 163 181 - -
Apr4g2685 266 SMART HOX_1 88 155 IPR001356 GO:0003677
Apr4g2685 266 MobiDBLite consensus disorder prediction 187 221 - -
Apr4g2685 266 ProSiteProfiles 'Homeobox' domain profile. 86 151 IPR001356 GO:0003677
Apr4g2685 266 PANTHER WUSCHEL-RELATED HOMEOBOX 13 8 265 IPR044559 GO:0003700
Apr4g2685 266 PANTHER - 8 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2685 Apr-Chr4 35500651 35503277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2685 9 266 Wox Gene Family AT4G35550 51.557 1.10e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Apr4g2685 Homeodomain 5.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2685 - - gmx:100784355 457.218