Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2677 ATGAAGAGAGAAAGAGAGGTCGATAGTGTGACCATGGCTAATTGTTTGATGCTGCTTTCACGTGGAGGTGAATTTGAGGCCACATACTCAAACTCTTCAAATAACAACCGTGTCTTTGAGTGCAAAACATGTAACAGGCAATTCCCTTCATTTCAAGCACTTGGTGGCCACAGGGCTAGTCACAAGAAGCCAAGATTGATGGGAGGGGATGGAGACATGGATGGCCAATTGAATCATGATTCACCCCCTAAGCCTAAGACCCATGAGTGTTCCATTTGTGGGTTGGAGTTTGCTATTGGACAAGCCTTGGGAGGACACATGAGGAGGCACAGAGCTGCAACTTTGAATGGAAACATGCACAATTCTACCACTATGAGTAGTAGTACTAGTGGTAGCAGTTTTGATTCTTCACCAAAGATGAAAGCTGGAGACAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGCAGTTTTTGAAGATTGGAAAGACAGCTGCTTTGGTTGATTATTTGTGTTAA 534 0.4288 MKREREVDSVTMANCLMLLSRGGEFEATYSNSSNNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMGGDGDMDGQLNHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAATLNGNMHNSTTMSSSTSGSSFDSSPKMKAGDKRVLVLDLNLTPFENDLQFLKIGKTAALVDYLC* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2677 177 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Apr4g2677 177 MobiDBLite consensus disorder prediction 117 137 - -
Apr4g2677 177 Gene3D Classic Zinc Finger 21 114 - -
Apr4g2677 177 PANTHER ZINC FINGER PROTEIN ZAT5 11 169 - -
Apr4g2677 177 SUPERFAMILY beta-beta-alpha zinc fingers 37 110 IPR036236 -
Apr4g2677 177 MobiDBLite consensus disorder prediction 117 139 - -
Apr4g2677 177 Pfam C2H2-type zinc finger 88 112 - -
Apr4g2677 177 Pfam C2H2-type zinc finger 38 64 - -
Apr4g2677 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Apr4g2677 177 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Apr4g2677 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Apr4g2677 177 PANTHER ZINC FINGER PROTEIN ZAT12 11 169 - -
Apr4g2677 177 SMART c2h2final6 88 110 IPR013087 -
Apr4g2677 177 SMART c2h2final6 39 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2677 Apr-Chr4 35452564 35453333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2677 1 169 C2H2 Transcription Factor Family AT2G37430 44.920 4.06e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g2677 zf-C2H2_6 8.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2677 - - gmx:100781134 279.641