Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2671 ATGGTGGGCAACGACGAAGCGTGCCCAATCTCCGCTTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCCTCTTCCCGCTCCGCCGCCGCCGGAAACAACCCTTCCGGCGAGGCTGCAAAGGGTTTTGCTGATCCCGATTCCGGCGCCGACGCTGCGAACGGGCAGAATCGGCGGTTTCCTCCGCCACCATTGACCCCTCGATCGCAGCAAAATTGCAAGGCTCGGTCGTGTTTGCCGCCGCTGCAGCCCCTTTCCATCGCTCGCCGGAGCTTGGACGAGTGGCCGAAGGCGAGCTCGGACGACATAGGTGAGTGGCCGCAGCCACCCACCACCCCCGGTGGGAGAGGTAATGGTAGTAATGGTGAAAGGTTGAAACTTGATTTGTCTTCAATTCAGCAGAACCCTGATCATAAGAACAATAATGGTGGGCTTGTGAAGAGGGATAAAATTGCTTTTTTTGATAAGGAATGTTCAAAGGTTGCTGATCATGTGTATCTTGGTGGTGATGCTGTTGCTAGGGACAGGGATATTTTGAAACAGAATGGTATCACTCATGTCTTGAATTGTGTGGGTTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTGTATAGGACATTGTGGCTGCAGGATAGTCCCTCTGAGGATATTACTAGTATTTTGTATGATGTGTTTGATTACTTTGAGGATGTCAGGGAAAAAAGTGGGAGGGTGTTTGTACACTGTTGTCAAGGGGTGTCTAGGTCTACCTCTTTAGTGATTGCTTACCTTATGTGGAGGGAAGGTCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCGAGAGGGATTGCGGATCCGAATATGGGTTTTGCTTGCCAGTTGTTACAGTGCCAGAAAAGGGTTCATGCGTTCCCTCTAAGCCCTAGCTCTTTGCTGAGGATGTACAGAATTGCTCCTCACTCACCGTATGATCCTTTGCATCTTGTTCCCAAAATGTTGACGGACCCTTCCTCGTCTGCTCTGGATTCCAGGGGTGCATTTATTATACACATTCCTTCTGCTATATATGTTTGGATTGGTAAGAGTTGTGAGACCATCATGGAAAGGGATGCCAGAGGGGCTGTGGGCCAGATTGTTCGTTATGAAAAAGTACAAGGACCTATAGTAGTGATTAGGGAAGGCGAGGAACCGCCTTATTTTTGGGACGCTTTCTCAAATTTTTTGCCTTTGATGGACAAATCCGGCAATAGAGTAGAAAATAGCAAATCAAGTTTTAAAATTGTGCCTGGTGAGAGGAAAGTGGATGCATATGATGTTGATTTTGAAGTTTTCAAAAAAGCAATCATTGGAGGTTTTGTGCCTCCATTTGCGTCATCAGAGGATGAACATGAAACCCATCTTCCTGCAAGAGAGAGTAGTTGGAGTGTTTTAAGGCGTAAAAATTCGTCTCCTAGTATGAAGGAGTTTGTCTCAGCCCCTAAGTTATCCTTTCCCAGGGTCTTTTCAGATTCCATGTTGTGTATTCATACATCAGCAAAGTCATCACCATCTCCATCGCTGTCGTCATCATCATCATCTTTATCATCATCTTCTTCACCATCTTATGTCTCTCCAGATTCAATTTCTTCTGATTCTAGCACTCATTCAAAGTTTTTGTCAGAATTGTCCTTGGATTCTTCAGCTGCAGTTTTGACTTCTGTATCTTCACCTTTGTCTAATTTTTCTAATTTATCTCTGTCATCAAATTCTAGTTCTCCAACAGTGTCTAACACTATAGATATCCATCGTTTCAAGTTATCAGATCCTCATTCTCTGTCAGCCTCTTTATCATTGAAAAAACCATCAACTTCCCTTGCTGAACGCAGAGGGAGTCTGTCAAAATCTTTAAAGCTGCCGGTAATGAATGATAAGACACAAGTAATAGATAAACCTTTGGCTCTTCATGCTAGTCGACAACATGGTGTTGTTAATGGCGATGTTAGCTATTTGCAACAATCAGATAATATAGATTATTTATGTGAGTCTAACAACCGAGCCAAGGATGGAGGTGTGAATTCAATTCAACAGTGTAAGCTGGCATTATGTCCAACCATTGTTGATAGTGTGCACTGCAAGGAATCGTCACTTGTCAGGAACTGTGTTGAGCCTTCGATAGATAGTTTCCCAAGAGAAGACTTAAATTCTACATCATCAAAGGGAACTAATGAGAGTGGCTCATTGCAGTATAGTGTGACACAAGCTTCGGTATATCTCTGGCCCAGTTTAGAAAAGCTTGAGACATTTGGTGCAAGTCATTTGGATTCTAAAGCTGCTTTTGTCATATTATCTCCAAGTATGCCTGTACATGCAGGAAACATTTTATATTTTTGGGTAGGGAGGTCTTTCAATTGTGACACCTCAAAGGCTCCCTTTGATAGTGATAGACAGTCAGATTTTCTAGGAGCTGTTGACTGGAATCGAATTGGTTGTGATCTCCTTGCTCGGTTTAGTTTGTTGAAGAATACAGTCATCAAGATTGTTAAAGAGAATGAAGAACCTCCAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2559 0.4392 MVGNDEACPISASRKMFWRSASWSSSRSAAAGNNPSGEAAKGFADPDSGADAANGQNRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQQNPDHKNNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSSSALDSRGAFIIHIPSAIYVWIGKSCETIMERDARGAVGQIVRYEKVQGPIVVIREGEEPPYFWDAFSNFLPLMDKSGNRVENSKSSFKIVPGERKVDAYDVDFEVFKKAIIGGFVPPFASSEDEHETHLPARESSWSVLRRKNSSPSMKEFVSAPKLSFPRVFSDSMLCIHTSAKSSPSPSLSSSSSSLSSSSSPSYVSPDSISSDSSTHSKFLSELSLDSSAAVLTSVSSPLSNFSNLSLSSNSSSPTVSNTIDIHRFKLSDPHSLSASLSLKKPSTSLAERRGSLSKSLKLPVMNDKTQVIDKPLALHASRQHGVVNGDVSYLQQSDNIDYLCESNNRAKDGGVNSIQQCKLALCPTIVDSVHCKESSLVRNCVEPSIDSFPREDLNSTSSKGTNESGSLQYSVTQASVYLWPSLEKLETFGASHLDSKAAFVILSPSMPVHAGNILYFWVGRSFNCDTSKAPFDSDRQSDFLGAVDWNRIGCDLLARFSLLKNTVIKIVKENEEPPEFLALLSSL* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2671 852 SMART dsp_5 157 296 IPR020422 GO:0006470|GO:0008138
Apr4g2671 852 MobiDBLite consensus disorder prediction 508 530 - -
Apr4g2671 852 SUPERFAMILY Actin depolymerizing proteins 755 850 - -
Apr4g2671 852 SMART VILL_6 306 403 IPR007122 GO:0051015
Apr4g2671 852 Gene3D Severin 308 404 IPR029006 -
Apr4g2671 852 Gene3D Protein tyrosine phosphatase superfamily 132 299 IPR029021 -
Apr4g2671 852 ProSitePatterns Tyrosine specific protein phosphatases active site. 241 251 IPR016130 GO:0016311|GO:0016791
Apr4g2671 852 MobiDBLite consensus disorder prediction 19 80 - -
Apr4g2671 852 ProSiteProfiles Dual specificity protein phosphatase domain profile. 157 299 IPR020422 GO:0006470|GO:0008138
Apr4g2671 852 MobiDBLite consensus disorder prediction 19 33 - -
Apr4g2671 852 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 216 277 IPR000387 GO:0016311|GO:0016791
Apr4g2671 852 SUPERFAMILY Actin depolymerizing proteins 304 409 - -
Apr4g2671 852 Pfam Dual specificity phosphatase, catalytic domain 165 295 IPR000340 GO:0008138|GO:0016311
Apr4g2671 852 MobiDBLite consensus disorder prediction 93 124 - -
Apr4g2671 852 PANTHER MKPA PROTEIN 1 845 - -
Apr4g2671 852 CDD DSP 158 292 - -
Apr4g2671 852 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 845 - -
Apr4g2671 852 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 298 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2671 Apr-Chr4 35407920 35412635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2671 2 193 Protein tyrosine phosphatase (PTP) family AT3G55270 61.979 1.81e-66 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2671 - - mtr:MTR_7g023250 1226.46