Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2630 ATGGAAGCAGCATTCCCAGAAGCTGGCGGCGGAGAAGAGGACACCAACATCGACGTGCACACCACGCGCGGCACTCCCATTCGCTACCTTCCACTCGATCACCTTTACTCCGCCACGTCACCCTGCCGCGTCACCGCCAGTGGCTCCTCCAATGTCATGTCGAAGAAGGTCAAGGCTCGCAAGCTCACTCTCAACCATTTCAACCACACCGAAAACGCGCAGCCTCTCGATCATCAGAGCAACAAGAAAACCACGCCGTCGCTGTCGCTTCCCAAGCCACCTCTCATTTATGTCTACTCTCGCCGGCGCAAGAGGCGTTTCTCTCCCACGGTGTCGTTTTGCGATTCGCCCGCGGGTCGGGTTGAGTCCGTGAACAAGGAATCTGATGGCGAGAGGAGGTTGCTGAAGAAGAGGAAAACTGGGACCACTGAGTTGGAGAAGTTGGGCGTTGATTTGAATACTGCGATTGGGAGCGTCGATGGGCCTCGATTGAGGGAATGTCGCGGCCAATTGGGGAATTCTGTGGTTGCTGGGAACGTTAAGTGTGGTTCCTTGGAGAAGTTACCCAAGTTGCTGCCTGAATCTCGTTCCGTGAAGAGATGGTTGGGGTTGAGTTTTGATAATGCTGATCCGGAGGCATTTGTCGGATTGCGATGCAAGGTTTATTGGCCCATAGATTTAAGATCATACACTGGCTATGTCAAAGGTTACGATAAGGAAACTAAGACTCATCACGTCAAGTATGACGACGGCGACGAGGAAAATTTAACTCTTTCAGATGAAAATGTAAAATTCCATGTTTCCCGTGATGAGACAAAACGTTTAAAATTGAATTATGCCAAAGTTCGTGACAGTAATGTCTCTGATTATGACATTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCAGGGGATATCATATGGGCCAAGCTAACTGGTCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATTGCTTGCTAGCAACTGTAAGGGTTTAAAAACATATATAGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAGGGTTTAGAAGAGGCTAAAAGGTACTTAAGTGAACAGAAGCTTCCTTTAGAGATGCTAGAGTTGCAGAAAAGATGTACAGCTGATGACTGTAACAATGTAAGTGGAGAGGTTGAAGGATGTACAGATTCAGGTGATGATTGTTTGAATGACAAGGGGATATGGCCAGCACAGGAGAACACTGAAACTTTTCCCTATGAAGTAGGAGACATGCAAATTCTAAATCTTGGAAAAATAGTTGAAGATTCTGCATCTTTTGGAGATGGAAGATTCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTCACTTCAGTTTCCGACCCTAAAGTATCTGTCCCTTACAAGATGGAGGTGTTGAGAGATCCAGAATCCAAACTCCGACCACTTTTTAGAGTGACAGTTGATGGTAGTGAGCAGTTCAATGGTTATACACCATCTGCTTGCTGGAATCAGGTATACAAAAGGATAAAGAAAGTGGAAAAGGATGCTTCTGAAGGTACTGTTGCTGAAAGTGGAGTAGAAAAGGGTTATGAATCTGGGTCAGATATGTTCGGTTTCTCCAATCCTGAAGTGGCTAAACTTATACAGGGATTGTCTAAATCAAAAATTTCTTCGAAGAACTTAGGTTCCAGAAGATATAATGACCTGCCTCTTGGTTATAGACAGGTTCATATTAACTGGTTTGACCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTTCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAGTGCTATGGTTATGCAACTTATGTCGATCGGGTGCTCCTCCCCCACCTTGCTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACTGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACATGCTTAGCTGATGTCAAGAAAATGGAGCCTATTGATGGTTTGAGTAGAATTAGTAAGGACCGCTGGAAGTTGTTATGCAGCATATGCGGTGTTTCTTATGGTGCCTGCATCCAATGTTCAAATAGTTCTTGTCGAGTGGCATATCATCCACTTTGTGCACGTGCAGCTGGTCTCTGTGTTGAGCTTGAGAACGAGGACAGGTTATATCTACTTTCTGTTGATGATGACGAAGACCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCATCTAATGATCATTCTGTTGCTGATGAACGTATTGTTCGAGTTGCTGGTCAGTGTTCAGACTATGAACCACCACCCAATCCATCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAACATGGATCGTTAAACAACCCAGAGCCTTCTGGCAGAGGAGTCTGCTCAAAATTCTTTTGTAGAAGGCTGAAAACCTCTCTGACTGACAATTCAAACAGCATACTTTCTACTGCTGAAAAATACAAGTACATGCGGGAAACATTTCGGAAACAGCTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTCCTATAGCTGACCGGAGAGAGCACTTCATATACAATTCATTGGTGGGTGCTGGAACCTATATGTTTCGGATTGATGATGAAAGAGTCATTGATGCTACCAGAGCGGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCGAATTGCTATTCAAGAGTTATAAGTGTTAATGGCGATGAGCATATTATAATATTTGCTAAGAGGGACATCAAACAGTGGGAAGAGCTTACATATGATTATAGATTTTTTTCAATTGATGAACGGCTTGCTTGTTACTGCGGCTTCCCAAAGTGCCGGGGTATAGTAAATGATACTGAGGCAGAAGAACGGGCTGCTACCCTGTATGCACCACGAAGTGAATTGATAGATTGGAAAGGAGAATAA 3258 0.4444 MEAAFPEAGGGEEDTNIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLTLNHFNHTENAQPLDHQSNKKTTPSLSLPKPPLIYVYSRRRKRRFSPTVSFCDSPAGRVESVNKESDGERRLLKKRKTGTTELEKLGVDLNTAIGSVDGPRLRECRGQLGNSVVAGNVKCGSLEKLPKLLPESRSVKRWLGLSFDNADPEAFVGLRCKVYWPIDLRSYTGYVKGYDKETKTHHVKYDDGDEENLTLSDENVKFHVSRDETKRLKLNYAKVRDSNVSDYDIEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDELLASNCKGLKTYIGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCTADDCNNVSGEVEGCTDSGDDCLNDKGIWPAQENTETFPYEVGDMQILNLGKIVEDSASFGDGRFIWPEGYTAVRKFTSVSDPKVSVPYKMEVLRDPESKLRPLFRVTVDGSEQFNGYTPSACWNQVYKRIKKVEKDASEGTVAESGVEKGYESGSDMFGFSNPEVAKLIQGLSKSKISSKNLGSRRYNDLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKKMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNDHSVADERIVRVAGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNPEPSGRGVCSKFFCRRLKTSLTDNSNSILSTAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWKGE* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2630 1085 Gene3D - 298 409 - -
Apr4g2630 1085 SMART PHD_3 621 668 IPR001965 -
Apr4g2630 1085 SMART PHD_3 731 797 IPR001965 -
Apr4g2630 1085 MobiDBLite consensus disorder prediction 69 88 - -
Apr4g2630 1085 ProSiteProfiles PWWP domain profile. 310 373 IPR000313 -
Apr4g2630 1085 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 10 1082 - -
Apr4g2630 1085 SUPERFAMILY FYVE/PHD zinc finger 613 683 IPR011011 -
Apr4g2630 1085 Pfam F/Y-rich N-terminus 457 507 IPR003888 GO:0005634
Apr4g2630 1085 Pfam PHD-finger 634 668 - -
Apr4g2630 1085 CDD SET_SETD1-like 909 1057 - -
Apr4g2630 1085 PANTHER PHD FINGER PROTEINS 10 1082 - -
Apr4g2630 1085 SUPERFAMILY Tudor/PWWP/MBT 304 417 - -
Apr4g2630 1085 ProSiteProfiles FYR domain FYRN motif profile. 451 510 IPR003888 GO:0005634
Apr4g2630 1085 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g2630 1085 ProSiteProfiles SET domain profile. 921 1039 IPR001214 GO:0005515
Apr4g2630 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 799 IPR013083 -
Apr4g2630 1085 Gene3D SET domain 869 1073 IPR046341 -
Apr4g2630 1085 Pfam SET domain 932 1038 IPR001214 GO:0005515
Apr4g2630 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 667 IPR013083 -
Apr4g2630 1085 Pfam F/Y rich C-terminus 516 589 IPR003889 GO:0005634
Apr4g2630 1085 ProSiteProfiles Extended PHD (ePHD) domain profile. 673 797 IPR034732 -
Apr4g2630 1085 SMART fyrc_3 518 608 IPR003889 GO:0005634
Apr4g2630 1085 ProSiteProfiles Post-SET domain profile. 1045 1061 IPR003616 -
Apr4g2630 1085 ProSiteProfiles FYR domain FYRC motif profile. 514 602 IPR003889 GO:0005634
Apr4g2630 1085 Gene3D - 212 265 - -
Apr4g2630 1085 Pfam PWWP domain 311 398 IPR000313 -
Apr4g2630 1085 SMART PWWP_4 308 371 IPR000313 -
Apr4g2630 1085 MobiDBLite consensus disorder prediction 69 89 - -
Apr4g2630 1085 SMART fyrn_3 466 510 IPR003888 GO:0005634
Apr4g2630 1085 SMART set_7 921 1045 IPR001214 GO:0005515
Apr4g2630 1085 Pfam PHD-zinc-finger like domain 675 796 - -
Apr4g2630 1085 SUPERFAMILY SET domain 918 1058 IPR046341 -
Apr4g2630 1085 ProSiteProfiles Zinc finger PHD-type profile. 619 670 IPR019787 -
Apr4g2630 1085 CDD ePHD_ATX1_2_like 682 796 IPR041956 -
Apr4g2630 1085 Gene3D - 452 592 - -
Apr4g2630 1085 ProSitePatterns Zinc finger PHD-type signature. 622 667 IPR019786 -
Apr4g2630 1085 CDD PHD_ATX1_2_like 621 667 IPR042010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2630 Apr-Chr4 35050755 35070724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2630 622 767 C2H2 Transcription Factor Family AT3G14740 39.735 4.51e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr4g2630 zf-HC5HC2H_2 4.9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2630 - - gmx:100808923 1929.07