Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2623 ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAACAGATACAATGCATGGAGGAAAGTGCTGAATCTTTAAGAGAGAGAAGTCTAAAATTTTATAAAGGATGTAGAAAATACACTGAAGGACTTGGGGAGGCATATGATGGAGACATTGCATTTGCAAGTGCACTAGAAACTTTTGGTGGTGGGCATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCTTAAGAGAAATCGGGACATACAAGGAAGTCCTTAGATCCCAGGTAAAATATTATGTTGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAACATTGATTTGCAAGAGGTCAAGGAAGCACGAAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGGGAAAGGTTTCTGTCACTGAGGAAAGGCACAAAAACTGATGTAGCTACTGCACTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTAGAAGCAGTCAGTGGCACCATGGATGCACATCTTCGTTACTTCAAACAGGGTTATGAATTGTTGCACCAAATGGAGCCATATATTAATCAGGTCTTGACTTACGCTCAGCAATCAAGAGAAAGGTCCAATTATGAACAAGCAGCACTAAATGAAAGAATGCAAGAGTACAAACGGCAGATTGATCGGGAGAGTAGGTGGGCTTCAAATGGTTCTAATGGATCTCCTAATGGAGATGGTATACAAGCCATCGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGGTTTTTTGTTCTTGATAGCCGGGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGCAGTCAACATTCTGGCCAGAGGAATAGCTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTATCTTCTCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACTATCAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGAATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCTTTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTACTGAGTTCTCAGATTCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATAATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCACTCTGCTGTTGAAGAATGTGCAGCTGATAGAAGTCTTGCATCTGCGCATTTGGAGCGCCCCTCAAGAAGTTTGCAACAGCAGCGATCCTGTACTAAAAGTGAGAAGCCAATTGATGTGTTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCACCTGAACCTGACTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATTTCAAAGGTCAGATCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTAGGGAATACTTTTGCCAACTCAGTCTGGGAGGAATTATTGCAATCGAGAAGTGCCTTTCAGGTTGATCTTGTCCCTCCAGGCTTAAGCAAGTCCGATAAACCACTGATGTTCTTCATCACCAAACCTTGTCAATCTGATTCTCTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAAGCCGAAAGACAGTCAATACCGTCTCTTGGTGGCACAGCAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTATACCGCTACATTGTTAATTCTGACGTAGACGTTAATGTTGTTTATGAGCAAATGTGCAGCAGCTCCTTAACCCTTGCCAAAGTAATGTTATTACAAGAGCAGACAAGCCATGATCAAAGCTCTACTTTAGCAGGGAACACATTGGACTGGTCCTCGAGTAAAGAAGGTCAGGTCATGGACAATCTAGATGGGTCCACCCTACTTCACCTGGCTTCTGAAACTGCAGATATTGGCATGGTGGAGCTCCTCCTACAGTATGGTGCAAATGTCAATGCAACTGATTTGAGAGGCCAAACACCACTACACCGCTGTATTCTCAAAGGCAGATCTACATTTGCGAGATTATTGCTTTCAAGGGGAGCGGATCCTCGAGCTGTGGATGATCAGGGAAGAACCCCTATTGAGCTTGCTGCTGAGTCAAATGCTGAAGACAGAGGAGTCCATGCTCCACTGACTGATTCTAATGGATGA 2484 0.4295 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVKYYVVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVATALEEELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHNRSTSESSSFESSDFDHSAVEECAADRSLASAHLERPSRSLQQQRSCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPPGLSKSDKPLMFFITKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDSQYRLLVAQQIWEAVRANDKKAVYRYIVNSDVDVNVVYEQMCSSSLTLAKVMLLQEQTSHDQSSTLAGNTLDWSSSKEGQVMDNLDGSTLLHLASETADIGMVELLLQYGANVNATDLRGQTPLHRCILKGRSTFARLLLSRGADPRAVDDQGRTPIELAAESNAEDRGVHAPLTDSNG* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2623 827 ProSiteProfiles Ankyrin repeat profile. 767 799 IPR002110 GO:0005515
Apr4g2623 827 Pfam Ankyrin repeats (many copies) 754 808 IPR002110 GO:0005515
Apr4g2623 827 SUPERFAMILY ArfGap/RecO-like zinc finger 505 645 IPR037278 -
Apr4g2623 827 Pfam BAR domain of APPL family 6 237 - -
Apr4g2623 827 SUPERFAMILY PH domain-like 298 449 - -
Apr4g2623 827 PANTHER CENTAURIN/ARF 1 825 IPR045258 GO:0005096
Apr4g2623 827 Gene3D - 290 443 IPR011993 -
Apr4g2623 827 CDD ArfGap 508 637 - -
Apr4g2623 827 ProSiteProfiles PH domain profile. 297 433 IPR001849 -
Apr4g2623 827 SMART 5bar 11 223 IPR004148 GO:0005515|GO:0005737
Apr4g2623 827 MobiDBLite consensus disorder prediction 443 466 - -
Apr4g2623 827 PRINTS HIV Rev interacting protein signature 517 536 IPR001164 GO:0005096
Apr4g2623 827 PRINTS HIV Rev interacting protein signature 536 553 IPR001164 GO:0005096
Apr4g2623 827 PRINTS HIV Rev interacting protein signature 559 580 IPR001164 GO:0005096
Apr4g2623 827 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 825 - -
Apr4g2623 827 CDD PH_ACAP 300 437 - -
Apr4g2623 827 Gene3D Arf GTPase activating protein 486 649 IPR038508 -
Apr4g2623 827 Pfam PH domain 299 432 IPR001849 -
Apr4g2623 827 ProSiteProfiles Ankyrin repeat region circular profile. 734 765 - -
Apr4g2623 827 ProSiteProfiles Ankyrin repeat region circular profile. 767 799 - -
Apr4g2623 827 SMART arf_gap_3 505 650 IPR001164 GO:0005096
Apr4g2623 827 SMART PH_update 298 435 IPR001849 -
Apr4g2623 827 Pfam Putative GTPase activating protein for Arf 508 645 IPR001164 GO:0005096
Apr4g2623 827 ProSiteProfiles Ankyrin repeat profile. 734 766 IPR002110 GO:0005515
Apr4g2623 827 MobiDBLite consensus disorder prediction 258 274 - -
Apr4g2623 827 Gene3D Arfaptin homology (AH) domain/BAR domain 4 256 IPR027267 -
Apr4g2623 827 MobiDBLite consensus disorder prediction 451 466 - -
Apr4g2623 827 Gene3D - 650 816 IPR036770 -
Apr4g2623 827 SMART ANK_2a 734 763 IPR002110 GO:0005515
Apr4g2623 827 SMART ANK_2a 767 796 IPR002110 GO:0005515
Apr4g2623 827 SUPERFAMILY Ankyrin repeat 661 814 IPR036770 -
Apr4g2623 827 ProSiteProfiles ARF GTPase-activating proteins domain profile. 505 650 IPR001164 GO:0005096
Apr4g2623 827 Coils Coil 232 252 - -
Apr4g2623 827 MobiDBLite consensus disorder prediction 794 827 - -
Apr4g2623 827 SUPERFAMILY BAR/IMD domain-like 6 320 IPR027267 -
Apr4g2623 827 MobiDBLite consensus disorder prediction 253 275 - -
Apr4g2623 827 CDD BAR_SFC_plant 14 220 IPR035670 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2623 Apr-Chr4 34980697 34990444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2623 517 644 C2H2 Transcription Factor Family AT4G21160 41.860 2.33e-20 91.7