Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2622 ATGGCTTTGGACAATCCTTCCAATCCCAACTCCGTTGACGGCGAGCCAGACGGAGCGGGTAACGGCGCTCCACCGTCTTCCGCCGTAGACGGCGACGACGGGAGGCCGGCGGCGCGGCTGCCACGGTGGACGAGGCAGGAGATCCTCGTTCTGATTCAAGGGAAGAGCGACGCGGAGAGCCGGTTCAAGCCGGGTCGTGGGGGCGGTTCGGCGTTCGGTTCGAGCGAGCCGAAATGGGCGTTGGTGTCTTCGTATTGCAAGAAGCACGGGGTGAACCGGGAACCGGTTCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTATAAGAAGATCAAGGAGTGGGAATCTCAGGCGAGGGACGAAACGGAGTCGTTTTGGCTTATGAGGAACGATTTGAGAAGGGAGAGGAAATTGCCCGGTTATTTCGATAGGGAAGTCTATGATATTCTCGATTCGCCGTCTACGGCGCCTCCGCCGCCGGTAGAAGCTCCGTCGACGGTGGTCGATGAGGAGGTGCACCTGTATGATAGTAATCGGAGGGTTGGTGGTGAAGATGGGCTCTTCTCGGATTGTGAGAAGGACGAGGTTTTGGGCACTGCTAAGGATGTTCCTGCTCCTGTTCCTATCTCAGAGAAGCAATATCAACTGCACCTCCAAGGCTGCGAAGGGGAAGGCAATGCTCAAGGTGGTACCAATGAGAAACAGCCAGCCTCAAATCCAGAAATGGGTTCTACCTCTCAAGGGGGACAGAAGAGGAAGCGATGTGCAACCGATGGAGAAGAGGAAATTTTACAAAGTCAATTAATTGATGTCTTAGAAAAGAATGGCAAAATGCTACGTGATCAACTTGAAGCTCAGAACATGAATTTCCAGTTGGATCGCCAGCAGCAGAAAGACACTGCAAGTACCATAGTTGCTGTACTTGATAAGCTTGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 972 0.536 MALDNPSNPNSVDGEPDGAGNGAPPSSAVDGDDGRPAARLPRWTRQEILVLIQGKSDAESRFKPGRGGGSAFGSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQARDETESFWLMRNDLRRERKLPGYFDREVYDILDSPSTAPPPPVEAPSTVVDEEVHLYDSNRRVGGEDGLFSDCEKDEVLGTAKDVPAPVPISEKQYQLHLQGCEGEGNAQGGTNEKQPASNPEMGSTSQGGQKRKRCATDGEEEILQSQLIDVLEKNGKMLRDQLEAQNMNFQLDRQQQKDTASTIVAVLDKLADALGRIADKL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2622 323 Coils Coil 270 301 - -
Apr4g2622 323 Pfam Myb/SANT-like DNA-binding domain 42 129 IPR044822 -
Apr4g2622 323 CDD GT1 41 113 - -
Apr4g2622 323 MobiDBLite consensus disorder prediction 1 42 - -
Apr4g2622 323 Gene3D - 43 111 - -
Apr4g2622 323 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 323 - -
Apr4g2622 323 MobiDBLite consensus disorder prediction 150 169 - -
Apr4g2622 323 ProSiteProfiles Myb-like domain profile. 35 106 IPR001005 -
Apr4g2622 323 MobiDBLite consensus disorder prediction 226 253 - -
Apr4g2622 323 MobiDBLite consensus disorder prediction 56 75 - -
Apr4g2622 323 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 1 323 - -
Apr4g2622 323 MobiDBLite consensus disorder prediction 219 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2622 Apr-Chr4 34974405 34977716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2622 42 114 Trihelix Transcription Factor Family AT1G33240 34.247 5.77e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr4g2622 Myb_DNA-bind_4 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2622 - - gmx:100804601 531.176