Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2621 ATGTCTGCCATGGTTTCTGCTCTTGCTCAAGTTATGGGCACTACCAATCGGAACCCCCTCATGCCACAAACAACAACCTCTTTTCCTGTCTCAACTTCAATGGTCAAAGAAGAACCTCATCCATACCCATCTCAACCTGCTCCAGATCAAGAGAGCACAAAGAAACCAAGGTACAGAGGAGTGAGACAGAGACCTTGGGGTAAATGGGCAGCAGAAATTCGTGACCCCAAAAAAGCAGCTAGAGTGTGGTTAGGAACATTTGAAACAGCTGAGGAAGCAGCCATTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCTAAGCTCAATTTCCCTGAAAGAGTTCAAGGTAACACTCATGTTGCCTATTTACAACAACCTTCAGAAAACACCAACGTTTTCCCTTTCCATGCAACTTCTACTGCCACTTGTGCTAGTGGGTCTGTTTCCTCTGTTGATGCTATTGCTCCTACTTCATCATCATTGTCCACACATGAACATGATCACCAAGTTTTCCCAAATCTGTTTCAATATGCACAAATTCTTTCAAGTGATGATGCTGAGTTCCCCTATTACACTTCCCATCTTTTCAATCAACGATTACAACAGCAACAACAACTACTACTACAACAACAACAACAACCTTTCAATTCTCAATCACCCTACTTCTACAACCAGCAACAACATTATGATGATGAAGGGCATGGTCACTCAGATCACTAG 729 0.428 MSAMVSALAQVMGTTNRNPLMPQTTTSFPVSTSMVKEEPHPYPSQPAPDQESTKKPRYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAAIAYDKAALKFKGTKAKLNFPERVQGNTHVAYLQQPSENTNVFPFHATSTATCASGSVSSVDAIAPTSSSLSTHEHDHQVFPNLFQYAQILSSDDAEFPYYTSHLFNQRLQQQQQLLLQQQQQPFNSQSPYFYNQQQHYDDEGHGHSDH* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2621 242 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Apr4g2621 242 MobiDBLite consensus disorder prediction 16 33 - -
Apr4g2621 242 CDD AP2 56 115 IPR001471 GO:0003700|GO:0006355
Apr4g2621 242 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Apr4g2621 242 PANTHER - 45 208 - -
Apr4g2621 242 PANTHER DNA-BINDING DOMAIN 45 208 IPR044808 GO:0003700|GO:0009873
Apr4g2621 242 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Apr4g2621 242 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Apr4g2621 242 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Apr4g2621 242 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Apr4g2621 242 MobiDBLite consensus disorder prediction 16 62 - -
Apr4g2621 242 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2621 Apr-Chr4 34962294 34965652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2621 4 199 AP2-EREBP Transcription Factor Family AT5G13330 47.030 2.09e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g2621 AP2 9.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2621 - - gmx:100500531 337.806