Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2619 ATGGTTGCCGCCAAGAAAACCAAGAAGACCCATGAGAGCATTAACAACAGGCTCGCTCTTGTTATGAAGAGCGGAAAATATACCCTCGGTTATAAAACCGTTCTAAAATCTCTAAGGAGTTCCAAAGGGAAACTGATTATCATTGCCAATAACTGCCCCCCTTTGAGGAAGTCCGAAATAGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCACTACAATGGGAACAATGTGGATTTGGGCACTGCATGCGGAAAATATTATAGAGTGTGCTGCCTCAGCATTGTTGATCCTGTTGATTCAGACATTGTTGAATGA 321 0.4206 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPVDSDIVE* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2619 106 Gene3D - 2 106 IPR029064 -
Apr4g2619 106 PANTHER RIBOSOMAL PROTEIN L30 1 105 IPR039109 GO:0003723
Apr4g2619 106 SUPERFAMILY L30e-like 13 105 IPR029064 -
Apr4g2619 106 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Apr4g2619 106 PANTHER 60S RIBOSOMAL PROTEIN L30 1 105 - -
Apr4g2619 106 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2619 Apr-Chr4 34957818 34959613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2619 1 106 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 86.792 4.03e-66 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2619 K02908 - ini:109159740 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2619 4 34957818 34959613 Apr6g0375 6 4273115 4275658 PCT