Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2614 ATGTTCCCTTCCACTAATTACACCTCCTCATGTTCTCACCCTTGTTTCCCTTCTGCTGCTGCTTCACCATACCCTCCTTTTACTTTCCTTAACCCTGAAAATTCTTCTGCAAGCAACACCTTTCTTCATGACCCACTTTCTATTACCTACATACCCACTCATTACCATGTTCCAGTCACTGAAACACTAACCAATTGGGCAGTTGCAGATTGTGCTGCTGCAGCAATGCTCAATCAAGATTTCAATGCTTCACTTTATGGCCTTACCAAGAAACCAACGAAGAAATCAACCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGTTTGAGGGACCGAAGGGTAAGGTTGTCCATAGAGATCGCACGCAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACCAAGTCCAAGAAAGCGATTAAGGAGCTAACTAGAAGCAAGCACAGCGTTGACAGCTTCTCTTCATCTTCGGAGGCTGAAGTGGTTTCAATGATTCACCAAGACCTACAACAACAACAACAACGGGTAGATTTGAAAGAGATGAAGTTGAAAGGGGCAGAGAAAGAACCTGCTTGCGTTAAGACAAAGATGAAGGAATCTAGGGAAAAGGCAAGGGCAAGAGCTAGGGAAAGGGCTAGTAGCAAGATATTGTGCAACATAACAGGTTCGAAGAAAGTGCAAGACATGAAGAAAAAGTGCCCTGAAACTGAAAATCCTCAAATCCTGCACCAATTGAGGTCACCCCTTCGACCACATCCTCAAATTGTGATTGTGGGCAGTGAAGAACCAAGAGGTGTAAACAACAGTGACTACAACTCCATTCCCAATTTGTCTCCAAATTGGGAAGCTAATAATGGTGCTACTGGACGCTCCAAATTTTGTGCAATAGCCAGCATGAATCTATCTACAGGGCTCCAAATCTTTGGAAAATCTTGGGATGAGTGCAACAATCCTCATCTATGCTAA 1005 0.4378 MFPSTNYTSSCSHPCFPSAAASPYPPFTFLNPENSSASNTFLHDPLSITYIPTHYHVPVTETLTNWAVADCAAAAMLNQDFNASLYGLTKKPTKKSTKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSVDSFSSSSEAEVVSMIHQDLQQQQQRVDLKEMKLKGAEKEPACVKTKMKESREKARARARERASSKILCNITGSKKVQDMKKKCPETENPQILHQLRSPLRPHPQIVIVGSEEPRGVNNSDYNSIPNLSPNWEANNGATGRSKFCAIASMNLSTGLQIFGKSWDECNNPHLC* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2614 334 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 265 332 IPR005333 GO:0003700
Apr4g2614 334 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 277 IPR005333 GO:0003700
Apr4g2614 334 Coils Coil 182 202 - -
Apr4g2614 334 ProSiteProfiles R domain profile. 211 228 IPR017888 -
Apr4g2614 334 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 20 277 - -
Apr4g2614 334 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 265 332 - -
Apr4g2614 334 ProSiteProfiles TCP domain profile. 98 156 IPR017887 -
Apr4g2614 334 Pfam TCP family transcription factor 97 228 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2614 Apr-Chr4 34905179 34906808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2614 41 161 TCP Transcription Factor Family AT1G67260 50.407 5.76e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr4g2614 TCP 2.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2614 - - gmx:100786452 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2614 4 34905179 34906808 Apr9g2889 9 35803496 35804859 ECH
Apr4g2614 4 34905179 34906808 Apr4g2614 4 34905179 34906808 ECH
Apr4g2614 4 34905179 34906808 Apr6g0366 6 4148100 4151955 ECH