Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2593 ATGGGGTCTCCAAGAGGAACAGCTCTTCTCAGTTTTGCTTTCTTTTTGTTTTGGAGCTATGCAAATGCTTTGCTTTCTCCTAAAGGAGTAAACTTTGAAGTGCAAGCTTTGATGGGCATAAAAGGTTCTCTAGACGATCCACATGGTGTTCTAGATAACTGGGATGGGGATGCAGTTGATCCATGTAGTTGGACTATGGTCACATGTTCTTCTGAAAACCTGGTCATTGGCCTTGGTACTCCCAGTCAAAGTTTGTCTGGCACCCTATCTCCAAGCATAGGCAACTTAACCAACCTTCAGATTGTGCTTCTGCAAAATAACAACATAACTGGACCAATCCCTGCAGAGCTAGGAAAACTTCCTAAGCTTCAGACTCTGGATCTCTCCAACAACTTCTTCAGTGGGGAAATTCCTCCTTCTCTTGGTCACCTGAGAAGCCTTCAATATTTCAGGAGGCTCAATAATAACAGTCTTGTTGGTGAATGCCCAGAGTCACTGGCTAACATGACACAACTTGCTTTTCTTGATTTGTCCTACAACAATCTCAGTGGCCCAGTGCCAAGAATTTTGGCCAAATCATTCAGCATTGTTGGAAACCCCCTTGTTTGTGCCACAGGAAAAGAACCAAACTGTCATGGGATGACACTGATGCCTATGTCCATGAACTTAAACAACACTGAAGGTGCTTTATCATCAGGCAGACCAAAAACTCATAAAATGGCCATTGCCTTTGGCTTGAGTCTGGGATGCCTCTGCCTCATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGGCACAAGCATAATCAACAAGCATTCTTTGATGTTAAAGATCGGCATCATGAAGAAGTGTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTGCTACTAACAACTTCAGCAGCAAAAACATACTTGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCCCTGATGGGACTCTTGTAGCTGTCAAAAGGCTTAAAGATGGCAATGCCACTGGAGGAGAGATTCAATTTCAAACTGAAGTTGAAATGATCAGCCTCGCAGTGCACCGAAACCTCCTAAGGCTGTATGGATTTTGTATGACACCAACAGAAAGGCTTCTAGTTTATCCATTCATGTCTAATGGCAGTGTTGCTTCTCGTCTCAAAGGTAAGCCAGTCCTGGATTGGGGCACAAGGAAGCATATTGCTTTAGGAGCAGCAAGGGGACTACTGTACCTTCATGAGCAGTGTGATCCAAAGATAATCCACAGGGATGTGAAAGCTGCCAACATATTGCTTGATGACTATTGTGAAGCTGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGAGTCACATGTCACAACGGCAGTGAGAGGCACTGTGGGGCACATTGCCCCAGAGTATCTATCCACAGGACAATCCTCTGAGAAGACTGATGTATTTGGATTTGGCATTCTCCTCCTTGAACTGATCACAGGCCTAAGGGCTCTTGAATTTGGAAAATCAGCTAACAATAAAGGAGCCATACTTGATTGGGTAAGGAAAATTCATTTGGAGAAAAAGCTTGAAATGCTAGTGGACAAGGATCTCAAGAACAATTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCACTCTTGTGTACTCAGTATCTTCCAGGCCATAGGCCTAAAATGTCTGAAGTGGTACGCATGCTTGAAGGTGATGGGCTAGCAGAAAGATGGGAAGCTTCTCAAAGAGTTGACAATACAAAGTGTAAACCTCATGAGTCATCTTCATCAGATAGGTATTCTGATCTTACTGATGACTCTTTATTGTTAGTCCAAGCCATGGAACTCTCAGGACCAAGGTGA 1875 0.4352 MGSPRGTALLSFAFFLFWSYANALLSPKGVNFEVQALMGIKGSLDDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGPIPAELGKLPKLQTLDLSNNFFSGEIPPSLGHLRSLQYFRRLNNNSLVGECPESLANMTQLAFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGKEPNCHGMTLMPMSMNLNNTEGALSSGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATNNFSSKNILGKGGFGNVYKGVLPDGTLVAVKRLKDGNATGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPFMSNGSVASRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKSANNKGAILDWVRKIHLEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRVDNTKCKPHESSSSDRYSDLTDDSLLLVQAMELSGPR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2593 624 Gene3D Ribonuclease Inhibitor 30 213 IPR032675 -
Apr4g2593 624 ProSiteProfiles Protein kinase domain profile. 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2593 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 624 - -
Apr4g2593 624 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Apr4g2593 624 Pfam Protein kinase domain 305 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2593 624 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
Apr4g2593 624 MobiDBLite consensus disorder prediction 586 604 - -
Apr4g2593 624 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Apr4g2593 624 SUPERFAMILY L domain-like 33 196 - -
Apr4g2593 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Apr4g2593 624 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Apr4g2593 624 Pfam Leucine Rich repeats (2 copies) 97 137 IPR025875 -
Apr4g2593 624 MobiDBLite consensus disorder prediction 586 607 - -
Apr4g2593 624 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Apr4g2593 624 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 8 624 - -
Apr4g2593 624 SMART serkin_6 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2593 Apr-Chr4 34693988 34698068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2593 9 624 Receptor kinase-like Gene Family AT5G16000 77.937 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Apr4g2593 Pkinase 4.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2593 - - gmx:100798412 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2593 4 34693988 34698068 Apr4g2593 4 34693988 34698068 ECH
Apr6g0326 6 3580924 3585293 Apr4g2593 4 34693988 34698068 PCT