Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2592 ATGTTGGAGACCGAACCCACGCCCACACCCACGTGGGCGCGCGTGTGCGACACGTGCCGCTCCGCCGCCTGCACCATCTTCTGCCGCGCCGACTCCGCCTACCTCTGCGCCGAGTGCGACTCGCGCGTCCACGCCGCCAACCGCGTGGCGTCGCGCCACGAGCGCGTGTGGGTCTGCGAGGCCTGCGAGCGTGCGCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCTCCTCCTGCGATGCCGACATCCACTCCGCCAACCCCCTTGCCAGCCGCCACCATCGTGTCCCCATTCTCCCCATCTCCGGCAACCTCTACGGCCACCATGTTCACGTGGCAGACAACGACGACGACGACGATGAAGAAGATGGTGCTGACGTGGAAGACGAAGACGAAGCTGCTTCTTGGCTCTTGCTTAACCCTGTGAAGACTAATAGTGTCAACAACAATAACACTCAGCAGAATAATGGGTTCTTGTTTAGTGCTGAAGTTGATGAGTATTTAGACCTTGTTGATCATTGTAACTCTTCTGCTGATGCTGATGCCGAAAATAACCACTTCACTGTTGCTGCTACTACTGATCATTACACTCATCATCATCAGCAGCATCAGCATGATCAACTATTTGGTGGGGTTTCTCAGAAGAGCTATGCTGGGGACAGTGTGGTTCCTGTTCAGCAACACCATCAAGGGCAACATTTTCAACTTGGTTTTGAGTTTGAGTCCTCTAAAGCTGCTTTCAGTTACAATGGTTCCGTTAGTCAAAGTGTTTCAGTTTCATCCATGGATGTTGGTGTTGTACCAGAATCAACAATCCGGGATGTCTCAATTGCTCATTCAAGACCTCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCGATTCAGATGCCTTCCCATCTTACTCCAATGGATAGGGAAGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATTAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAAGGTCGATTTGCCAAGAGAACAGCTGTAGAAGCAGAAGTGGATCAAATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1137 0.5172 MLETEPTPTPTWARVCDTCRSAACTIFCRADSAYLCAECDSRVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGNLYGHHVHVADNDDDDDEEDGADVEDEDEAASWLLLNPVKTNSVNNNNTQQNNGFLFSAEVDEYLDLVDHCNSSADADAENNHFTVAATTDHYTHHHQQHQHDQLFGGVSQKSYAGDSVVPVQQHHQGQHFQLGFEFESSKAAFSYNGSVSQSVSVSSMDVGVVPESTIRDVSIAHSRPPKGTIDLFSGPPIQMPSHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTAVEAEVDQMFSTTLITEVGYGIVPSF* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2592 378 ProSiteProfiles Zinc finger B-box type profile. 11 58 IPR000315 GO:0008270
Apr4g2592 378 SMART bboxneu5 11 58 IPR000315 GO:0008270
Apr4g2592 378 SMART bboxneu5 59 101 IPR000315 GO:0008270
Apr4g2592 378 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 378 IPR045281 GO:0009909
Apr4g2592 378 Pfam CCT motif 309 351 IPR010402 GO:0005515
Apr4g2592 378 Pfam B-box zinc finger 56 101 IPR000315 GO:0008270
Apr4g2592 378 ProSiteProfiles CCT domain profile. 309 351 IPR010402 GO:0005515
Apr4g2592 378 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Apr4g2592 378 CDD Bbox1_BBX-like 15 58 - -
Apr4g2592 378 MobiDBLite consensus disorder prediction 114 134 - -
Apr4g2592 378 MobiDBLite consensus disorder prediction 119 134 - -
Apr4g2592 378 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 5 378 - -
Apr4g2592 378 CDD Bbox1_BBX-like 58 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2592 Apr-Chr4 34682731 34685223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2592 1 378 C2C2-CO-like Transcription Factor Family AT3G02380 57.584 1.47e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr4g2592 zf-B_box 4.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2592 - - gmx:100301886 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2592 4 34682731 34685223 Apr4g2592 4 34682731 34685223 ECH
Apr6g0324 6 3564603 3566457 Apr4g2592 4 34682731 34685223 PCT