Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2575 ATGGTTCATCAAGTTGATTTAGTTATTATCTGTGTCTCTGTTGGGGTGGCCCTTGGAGTTTTGATAGCTTGCTTCATATTTTTTGGCATAAGGTGGTACAAGAAGCGAGCTCATCTAAGGCGATCTGTGGATGAGCCTAGTTTAACAACTCTCCCAATAAGAGCAAATGGGGTAGGAACAAGCACTGAGTTTAGTGCTTCTCTCTCCAGTTCCATAGCCACTTCAAGGTCAGAAAATCCACAGAAAAACTCCCATTTAACTAGGTGGAATCATCAAAATAACGATGGGCTTGCTTCAGTGCCAGGCATTCTAAAGTATTCATACAAAGAAATTCAAAAGGCCACCCAAAATTTCACAAATACATTGGGACAAGGATCATTTGGCATGGTATATAAAGCCATTATGCCTACAGGAGAGGTGGTAGCTGTAAAGATGCTTGCACCCAATTCCAAACAGGGGGAAAAAGAATTCCAAACAGAGGTGCTTCTGCTTGGAAGACTGCATCATCGGAATCTTGTGAATTTGGTAGGATACTGCATAGATAAAGGACAGCATATACTGGTTTATGAGTTCATGAGTAATGGAAGTTTGGCAAACCTTTTATATGGTGAAGAAAAGGAATTGGGTTGGGATGAAAGGCTGCAAGTTGCTGTTGATATTTCACATGGAATAGAATACCTTCATGAAGGAGCAGTCCCACCCGTCATACATCGTGATTTGAAATCTTCCAACATATTGCTAGATCACTCAATGAGAGCCAAGGTTTCTGATTTTGGGCTCTCTAAGGAAGAGATTTTTGATGACCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTTCCACAAGCAAGCTTACAATGAAGAGTGACATTTACAGCTTTGGTATACTCATATTTGAGCTCATCACTGCCATCCATCCACACCAAAATTTGATGGAATATATCAACCTTGCTGCAATGGATCATGATGGTGTAGATGGGATTCTTGACAAGCAACTTGTGGGAAAATGCAACCTTGAAGAAGTGAGGCAGCTTGCTAGAATTGCACACAAATGTTTGCACAAATCACCTCAGAAACGCCCCTCCATAGGTGAGGTTTCACAGTGTATATTGAGGATTAAGCAAAAGCGCCTTATGAAAGAAGACACCATGTCATTTGCAAGCAGCAACTTCACCCGAATTGTGAGTCAAATAGAGGATCAACAGGTTGAATTAAGTAGAATAACCACCATGAACCACAGAGAAACACGGTGA 1269 0.4121 MVHQVDLVIICVSVGVALGVLIACFIFFGIRWYKKRAHLRRSVDEPSLTTLPIRANGVGTSTEFSASLSSSIATSRSENPQKNSHLTRWNHQNNDGLASVPGILKYSYKEIQKATQNFTNTLGQGSFGMVYKAIMPTGEVVAVKMLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLVGYCIDKGQHILVYEFMSNGSLANLLYGEEKELGWDERLQVAVDISHGIEYLHEGAVPPVIHRDLKSSNILLDHSMRAKVSDFGLSKEEIFDDRNSGLKGTYGYMDPAYISTSKLTMKSDIYSFGILIFELITAIHPHQNLMEYINLAAMDHDGVDGILDKQLVGKCNLEEVRQLARIAHKCLHKSPQKRPSIGEVSQCILRIKQKRLMKEDTMSFASSNFTRIVSQIEDQQVELSRITTMNHRETR* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2575 422 Pfam Protein tyrosine and serine/threonine kinase 118 374 IPR001245 GO:0004672|GO:0006468
Apr4g2575 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Apr4g2575 422 SUPERFAMILY Protein kinase-like (PK-like) 89 373 IPR011009 -
Apr4g2575 422 CDD STKc_IRAK 122 378 - -
Apr4g2575 422 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2575 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2575 422 Gene3D Phosphorylase Kinase; domain 1 77 191 - -
Apr4g2575 422 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Apr4g2575 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Apr4g2575 422 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Apr4g2575 422 PANTHER OS01G0750732 PROTEIN 9 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2575 Apr-Chr4 34545975 34550045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2575 89 380 Receptor kinase-like Gene Family AT1G79620 43.548 7.75e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Apr4g2575 PK_Tyr_Ser-Thr 4.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2575 - - gmx:100794239 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2575 4 34545975 34550045 Apr4g2575 4 34545975 34550045 ECH
Apr4g2575 4 34545975 34550045 Apr6g0291 6 3022513 3031756 PCT