Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2572 ATGGCTAGGTCTGCAAAAGGGCATCAAGATGAATTCGAGGACGACGAAGATGAAGAACTCTTAACTGCAAACACTTCTTCCTCTCTCAACAAGGTCAAGGTGGATGAACCCAGCAGCGGGAAGAGAGTGAACCCACATCGTTCAAAGCATTCAGAGACTGAACAGCGTAGAAGGAGCAAGATTAACGAAAGATTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGATAAGGCCTCCTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTACAGGAAAAAATACAAATTTATGAACAGTCTTATGAAGGATGGAATCAGGAGCCAACGAAATTAATTCCATGGAGAAATCATCATGGGCCTGCAGAAAATACTACAGATCCTTCTCAAGCCATACAAAATGGATCCGTAAATGAGAAAAATAATGATGTCTGTTCATCATTGCCCAAAAATATACAGAACGCAATAGAGTCTGACTTCTCAGCAACAACTATTCAGAAAAGCCATACCCCTGGTTCGGCTACAGAAGCAGTTCCCCTGACCATGCAAATGCGATTGGACATGTTTGACCCAGTTGTTAGCAGTGGTATGGCCACCCAACATCTGCAGGAACCTGTATCTAATATTGACATGCCTTCCCATACCCAGCCTCAAGTGTGGCTAAATAAACCAAACAAGGGCAACTATATTCTTCCACATAATAATACATTGAAGGAAGAAGAGGAGCTTGCAATTGAAAATGGATCAGATAGCATCTCAAGTGCCTATTCTCAGGGAATATTAGATAATCTCACACAAGCACTGCAGTCTTCGGGTGTAGATATGTCCCAGACTAGTGTCTCAGTGCAATTTGATGTTGGTAGACGAACCAATACTGAGTTGACCCCCACTGCATATGGTGCAAAGGATCATGAAAACCATTTTGTGAACAATCGAGCAATAGCAGGTTCCGGAGTTGATTACTGCAATGAGGATTCTGAACAATGTCCTAAAAGGCTTAGACAAGAAGCAAGCTAG 1029 0.4179 MARSAKGHQDEFEDDEDEELLTANTSSSLNKVKVDEPSSGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKIQIYEQSYEGWNQEPTKLIPWRNHHGPAENTTDPSQAIQNGSVNEKNNDVCSSLPKNIQNAIESDFSATTIQKSHTPGSATEAVPLTMQMRLDMFDPVVSSGMATQHLQEPVSNIDMPSHTQPQVWLNKPNKGNYILPHNNTLKEEEELAIENGSDSISSAYSQGILDNLTQALQSSGVDMSQTSVSVQFDVGRRTNTELTPTAYGAKDHENHFVNNRAIAGSGVDYCNEDSEQCPKRLRQEAS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2572 342 MobiDBLite consensus disorder prediction 120 146 - -
Apr4g2572 342 MobiDBLite consensus disorder prediction 35 61 - -
Apr4g2572 342 SMART finulus 51 101 IPR011598 GO:0046983
Apr4g2572 342 Coils Coil 92 112 - -
Apr4g2572 342 MobiDBLite consensus disorder prediction 126 146 - -
Apr4g2572 342 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Apr4g2572 342 Gene3D - 44 116 IPR036638 GO:0046983
Apr4g2572 342 CDD bHLH_AtBIM_like 47 120 - -
Apr4g2572 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 124 IPR036638 GO:0046983
Apr4g2572 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Apr4g2572 342 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 341 IPR044295 GO:0003700|GO:0006351|GO:0046983
Apr4g2572 342 PANTHER TRANSCRIPTION FACTOR BIM3 1 341 - -
Apr4g2572 342 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2572 Apr-Chr4 34528025 34532198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2572 3 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 39.404 9.60e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g2572 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2572 - - gmx:100791730 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2572 4 34528025 34532198 Apr4g2572 4 34528025 34532198 ECH