Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2564 ATGGGTTCTGTTTGTAGCTGTTTGAATGCTGGTGATCTTGAAGATTACATGAATCCAAACAATCCTGCATATAGGAACTGTTATACCTCAATATTCCATAGAGGGGAAGTGCATTCAATTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGATGTGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGATCCCCGGTGTTTCCGTTCACAGCGTGATGGACTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTATAAATTCGGGTGGTAAATGGAATGATATTTCTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCTGTGCGACTTTCATCGGCAAAACTTACGACTGGAGCTGCGCTTGTTGATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCAAAGATATTGACAAAATGCTCTCATCATTTCCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 642 0.4174 MGSVCSCLNAGDLEDYMNPNNPAYRNCYTSIFHRGEVHSIPSSIQGAASMTSTASLDNSLSDVYRSPPRPLPYDADPRCFRSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESINSGGKWNDISEDGSKEYRSKSSVRLSSAKLTTGAALVDSSSEEEDVCPTCLEEYTEENPKILTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2564 213 MobiDBLite consensus disorder prediction 78 110 - -
Apr4g2564 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 210 IPR013083 -
Apr4g2564 213 SMART ring_2 163 203 IPR001841 -
Apr4g2564 213 Pfam RING-H2 zinc finger domain 158 203 IPR024766 GO:0008270
Apr4g2564 213 SUPERFAMILY RING/U-box 156 210 - -
Apr4g2564 213 MobiDBLite consensus disorder prediction 59 139 - -
Apr4g2564 213 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 212 - -
Apr4g2564 213 ProSiteProfiles Zinc finger RING-type profile. 163 203 IPR001841 -
Apr4g2564 213 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2564 Apr-Chr4 34453782 34460578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2564 1 212 C3H Transcription Factor Family AT5G15790 56.277 1.71e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2564 - - gmx:100788192 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2564 4 34453782 34460578 Apr4g2564 4 34453782 34460578 ECH