LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g2561	ATGGGAAGGGGTAGGGTTCAGTTGAAGCCGATCGAGAACAAAACAAGTCAACAAGTCACCTTTTCGAAGCGCAGAACGGGACTCCTTAAGAAAGCTAATGAAATCTCTGTGCTCTGTGATGCTCAGGTCGCCTTGATTATGTTCTCCACCAAAGGCAAACTTTTTGAGTACTCCTCTGAACGCAGCATGGAAGACATCCTGGAACGGTATGAGAGACATACCCATACAGAACTTGGTGAAGCTAACAATGAACCACAGGGTAACTGGTCTTTCGAATATATCAAGCTCACCGCTAAAGTTGAAGTCATAGAGAGGAACGTAAGGAACTTCTTGGGAAATGACTTGGATCCCTTGACTCTCAAAGAGCTTCAGAGTTTGGAGCAGCAACTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGCTGCACAAAAGGATGAAGGAGAAAGTGAAGACACAGACCGAACGTCCACACAGCTGCCCAGAAACCCTAGGCCAAAGTGCAGCCACCCTCAATTTATCTTCTCCAGAGCTACTACCATCACAAAGACTTGTTCCATCTCTAACTCTCAGTGGGACTTTACAAGGAAGAGTATCTCTGGAAGAAACAGGTGAAGCTCAAACAGCTCCTAGTGGCAATGCTATCATCCCACCATGGATGCTACATATATGA	702	0.4544	MGRGRVQLKPIENKTSQQVTFSKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSERSMEDILERYERHTHTELGEANNEPQGNWSFEYIKLTAKVEVIERNVRNFLGNDLDPLTLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRMKEKVKTQTERPHSCPETLGQSAATLNLSSPELLPSQRLVPSLTLSGTLQGRVSLEETGEAQTAPSGNAIIPPWMLHI*	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g2561	233	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Apr4g2561	233	ProSiteProfiles	K-box domain profile.	86	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Apr4g2561	233	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Apr4g2561	233	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Apr4g2561	233	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Apr4g2561	233	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Apr4g2561	233	SUPERFAMILY	SRF-like	2	87	IPR036879	GO:0003677\|GO:0046983
	Apr4g2561	233	Gene3D	-	13	84	IPR036879	GO:0003677\|GO:0046983
	Apr4g2561	233	PANTHER	TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1	1	209	-	-
	Apr4g2561	233	Pfam	K-box region	85	161	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Apr4g2561	233	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Apr4g2561	233	PANTHER	MADS BOX PROTEIN	1	209	-	-
	Apr4g2561	233	Coils	Coil	123	143	-	-
	Apr4g2561	233	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g2561	Apr-Chr4	34432099	34443163	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr4g2561	1	158	MADS-box Gene Family	AT1G26310	62.346	3.17e-68	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Apr4g2561		K-box	3.6e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g2561	K09264		-	gmx:100786580	383.259

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr4g2561	4	34432099	34443163	Apr1g1013	1	16611095	16619346	ECH
	Apr4g2561	4	34432099	34443163	Apr9g2935	9	36193783	36199560	ECH
	Apr4g2561	4	34432099	34443163	Apr4g2561	4	34432099	34443163	ECH
	Apr4g2561	4	34432099	34443163	Apr6g0286	6	2956873	2966322	ECH
	Apr7g1378	7	20866457	20872030	Apr4g2561	4	34432099	34443163	ECH
	Apr4g2561	4	34432099	34443163	Apr6g0286	6	2956873	2966322	PCT