Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2559 ATGGTAGCTATGATGGGTTCCCTCTCAACAGAGAAAGGGTGGAGGAAAGGCCCTTGGACTCATGAAGAGGACAAATTGCTAAATGAATATGTTAGCTTGCATGGGGAGGGTAGGTGGAGTTCGGTGGCTAAGTTTACAGGCTTAAATAGAAGTGGCAAAAGTTGCAGGTTGAGATGGGTAAATTATTTGAGGCCTGGTCTCAAGAAAGATCAGTTAACGCCTGTGGAAGAAGGAATCATTATTGAACTACATGCAATTTTGGGTAACAAGTGGTCTACAATAGCGAAGTACCTCCCGGGTAGAACTGATAACGAAATTAAGAACTACTGGAGAACTCACTTCAGGAAGAGAGACAAACCCAACCACAAGAAGCTAGACAGTGGAAAAGCATCAAAGGTACTAAAACAGTCGAAACAAAAGCAACAACAAGAACAGCAACCTCAGGATCAAGATATAAAAAACATCACGTCTCATGAGAAGACCAAAAATAATGAAACAAAATCCTCAGAGACACAACAAAACGAGCAACAAGGGATGGGTGTCATGCACCCAACAATGGAGCACCAATATAATCTCCCTTTAATGTATCAGGAATTATCATCCACGTGGCAAGATACTATTAGAGCAGATGATAGCATATGGTGTAGTTTATGGGATTTCAATGAACCCCAAGGATTTGCCGATTATTCAAAGCAGTTTTGCGAATGTGTCGTGCCAAATCAACCTACCTTTGCAGATGATGGAGGGGATTCGATGCAAAACCAAGATAAAATTTCTTGTTTTGATTATACTTACGATAACCTTTTCTACGGAAAACACATGTTTGGATGA 831 0.4067 MVAMMGSLSTEKGWRKGPWTHEEDKLLNEYVSLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKDQLTPVEEGIIIELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFRKRDKPNHKKLDSGKASKVLKQSKQKQQQEQQPQDQDIKNITSHEKTKNNETKSSETQQNEQQGMGVMHPTMEHQYNLPLMYQELSSTWQDTIRADDSIWCSLWDFNEPQGFADYSKQFCECVVPNQPTFADDGGDSMQNQDKISCFDYTYDNLFYGKHMFG* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2559 276 MobiDBLite consensus disorder prediction 111 178 - -
Apr4g2559 276 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 225 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr4g2559 276 CDD SANT 73 114 IPR001005 -
Apr4g2559 276 PANTHER MYB TRANSCRIPTION FACTOR 4 225 - -
Apr4g2559 276 SMART sant 15 65 IPR001005 -
Apr4g2559 276 SMART sant 68 116 IPR001005 -
Apr4g2559 276 Gene3D - 16 69 - -
Apr4g2559 276 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Apr4g2559 276 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Apr4g2559 276 Pfam Myb-like DNA-binding domain 73 113 IPR001005 -
Apr4g2559 276 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Apr4g2559 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Apr4g2559 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Apr4g2559 276 MobiDBLite consensus disorder prediction 134 152 - -
Apr4g2559 276 Gene3D - 72 117 - -
Apr4g2559 276 CDD SANT 18 63 IPR001005 -
Apr4g2559 276 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2559 Apr-Chr4 34403393 34406243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2559 13 275 MYB Transcription Factor Family AT3G30210 46.097 5.69e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g2559 Myb_DNA-binding 6.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2559 K09422 - gmx:100785540 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2559 4 34403393 34406243 Apr4g2559 4 34403393 34406243 ECH