Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2552 ATGAGGCTTGTCATATCAGCTCTCTCTGTTATTGTGCTATTCTCTTATGCAGCTGCGTATGATCCTTTGGATCCAAACGGAAACATAACGATCAAATGGGATGTTGTGTCTTGGACGCCAGATGGCTATGTAGCAGTGGTAACAATGAGCAATTTCCAAATGTTTCGGCACATAATGAATCCTGGATGGACTTTGGGATGGACGTGGGCAAAGAAAGAAGTTATATGGTCCATGGTAGGGGCTCAAACCACCGAGCAAGGAGATTGCTCTAAGTTCAAAGGCAACGTGCCTCACTGCTGCAAGAAAATTCCCACGGTTGTAGACTTGCTACCTGGTGTGCCTTACAACCAGCAATTCTCAAACTGTTGCAAAGGTGGAGTGGTGGCAGCATGGGGCCAAGACCCTTCCTCAGCTGTCTCATCCTTCCAAATCAGTGTTGGCCTTGCTGGTACTTCAAACAAGACAGTTAAACTCCCTAAGAACTTCACTCTCTTGGCCCCAGGACCAGGCTACACTTGTGGCCCTGCCAAGATTGTTCCTTCTACTGTTTTCCTAACACCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACTTGCACATACTCACAATTTCTGGCCAGAAAGAACCCAGGTTGCTGTGTATCTTTGTCATCCTTCTACAATGAGACCATTACCCCTTGCCCCTCTTGTGCCTGTGGCTGCCAGAACAAGAAGAATTGTGTCAAGAGTGACTCTAAACGTCTCAGCATGGTGGGAATTCACACCCCAAAAAAAGACAATGAACCACTGCTACAGTGCACTCATCATATGTGCCCAATAAGGGTACACTGGCATGTGAAGCTCAACTACAAGGATTATTGGCGAGTCAAGATTGCTGTAACAAATTTCAATTACAGGATGAATTACTCACTCTGGACTCTTGCTGTTCAGCATCCAAATCTCAACAATGTCACCCAAGTGTTCAGCTTTGATTACAAGCCTTTGCTTCCCTATGAGTCCATAAATGACACTGGTATGTTCTATGGCATGAAATACTTCAATGATCTCTTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAAGTGCTTCTTCAGAAGGACATGAATACGTTCACATTCAAGCAAGGGTGGGCATTTCCTCGAAAGGTTTACTTCAATGGTGAAGAATGCATGCTTCCACCACCTGATACCTACCCATTCCTCCCTAATTCTGCCCCTGCAAACCTACTTAACTTCCCAGCATTCATTTTCTCACTGCTTGTCATGCTAGCTGGTTGGTGA 1296 0.4537 MRLVISALSVIVLFSYAAAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMSNFQMFRHIMNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKIPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSSAVSSFQISVGLAGTSNKTVKLPKNFTLLAPGPGYTCGPAKIVPSTVFLTPDKRRKTQALMTWNVTCTYSQFLARKNPGCCVSLSSFYNETITPCPSCACGCQNKKNCVKSDSKRLSMVGIHTPKKDNEPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAVTNFNYRMNYSLWTLAVQHPNLNNVTQVFSFDYKPLLPYESINDTGMFYGMKYFNDLLMEAGPTGNVQSEVLLQKDMNTFTFKQGWAFPRKVYFNGEECMLPPPDTYPFLPNSAPANLLNFPAFIFSLLVMLAGW* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2552 431 PANTHER PROTEIN COBRA 4 429 IPR006918 GO:0010215|GO:0031225
Apr4g2552 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Apr4g2552 431 PIRSF COBRA 1 430 IPR006918 GO:0010215|GO:0031225
Apr4g2552 431 PANTHER COBRA-LIKE PROTEIN 4 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2552 Apr-Chr4 34325135 34327758 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2552 7 430 COBRA Gene Family AT3G02210 64.679 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2552 - - gmx:100783410 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2552 4 34325135 34327758 Apr4g2552 4 34325135 34327758 ECH
Apr4g2552 4 34325135 34327758 Apr6g0277 6 2835781 2838396 ECH
Apr4g2552 4 34325135 34327758 Apr6g0277 6 2835781 2838396 PCT