Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2550 ATGGCCCAGTCCTTCGGTCAGACCGAGATTAACTGGGACAAGCTAGATAAAACTAAGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTTACAGTGGCACTTTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAAGATACGGTAGAGAGAAATGCTTTTTCTGTTGTAAAAGGAATACTTAGAACAGATGGCATTCTCGGTTTGTATAGAGGATTTGGTACAGTTATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCACCACTCTAGAGACCACAAAGGTGGCTGCCTTCAGAATGCTTGAACCGTTTAGACTATCTGAAACTACCCAGGCTGCTATAGCAAATGGAGTTGCAGGCATGACATCATCGCTTTTTGCTCAATCTGTGTTCGTGCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGTCATGCCCAATATAGAGGGGGTCTAGATGTTGCTCGTAAGGTTTTAAGGTCTGATGGCATTCGGGGATTGTATCGAGGGTTTGGTCTGTCTGTTATTACTTATTCACCTTCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGTCAACGCTTCATTTGGAGTTTCTTGGACCACAGTGCCAAACATGATCAAGGCACTCCTAGTCTGCAAAAGATTATGTTAGTTCAGGCTGCTGGAGGGATTATTGCTGGTGCAACTGCTTCCTGCATTACAACCCCATTGGACACTATCAAGACACGATTACAGGTAATGGGACATGAAAATAGAATCTCCGTAAAACAAGTTGCTAAAGATTTAATCAATGAAGAAGGTTGGAAAGGCTTTTATAGAGGGTTCGGTCCAAGATTTTTTAGCATGTCAGCATGGGGCACTTCAATGATATTGACTTATGAGTATCTGAAACGCGTGTGCTCAAAGGATGAATAG 945 0.4328 MAQSFGQTEINWDKLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVATKDTVERNAFSVVKGILRTDGILGLYRGFGTVITGAIPARIIFLTTLETTKVAAFRMLEPFRLSETTQAAIANGVAGMTSSLFAQSVFVPIDVVSQKLMVQGYSGHAQYRGGLDVARKVLRSDGIRGLYRGFGLSVITYSPSSAVWWASYGSSQRFIWSFLDHSAKHDQGTPSLQKIMLVQAAGGIIAGATASCITTPLDTIKTRLQVMGHENRISVKQVAKDLINEEGWKGFYRGFGPRFFSMSAWGTSMILTYEYLKRVCSKDE* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2550 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 314 - -
Apr4g2550 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Apr4g2550 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Apr4g2550 314 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 314 - -
Apr4g2550 314 Gene3D Mitochondrial carrier domain 21 314 IPR023395 -
Apr4g2550 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Apr4g2550 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Apr4g2550 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Apr4g2550 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Apr4g2550 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Apr4g2550 314 Pfam Mitochondrial carrier protein 25 100 IPR018108 -
Apr4g2550 314 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Apr4g2550 314 Pfam Mitochondrial carrier protein 228 313 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2550 Apr-Chr4 34312065 34317387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2550 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 76.221 4.39e-173 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2550 K15121 - gmx:100782750 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2550 4 34312065 34317387 Apr4g2550 4 34312065 34317387 ECH
Apr6g0274 6 2801852 2808092 Apr4g2550 4 34312065 34317387 PCT