LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g2549	ATGGTGCCCGTGAGAACAAACAAATTTAGCAGTGTTGCCAAATCATCAGGAGTCAAACTCTTCAATATGATATTATTCTCAATCATGTTCATCATCCCCGTTAATTCTTACCCCCTTACAGAAGATTTCGCAATTAATTGTGGCTCTTCATTTGAATCAAATTCTATAGTGGGTGACCGTATATGGAGCCGAGACATCGATTCACAACACTTTTCTCTCTTAGAACTGCAAGATCAAAACCACTCTTCAATAACCGCAGTTTCTGATCCTATAGTTAACCATATCCCATACGGCACCGCACGCCTTTCTCAATATGAATTCACTTACTCCTTTTCCGTCACCGTTGGCCCAAAGTTCCTTAGGCTTTATTTTCACGCAGCTTCATACCGTAGTTTCAACCGTTCCAAGTCCTTATTTTCCGTAAAAGCAGGTCCTTACGCCCTTCTAAAGGGTTTCAACGCTTCACGTGTTGCTGAAGAGTACGGTGATTCCAATAAGATTGTTCTCATGGAGTATTGCATAAACGTTGAACAAGGTCAAAGGCTAAACATTACCTTCACTCCGAACCTAACTAAAGATGCCTTTGCCTTTATCAACGGAATAGAAGTGTTATCTTCTTTCAAACACAATCTTCTTTGCGATAAGCAAAATTATTCAGGGTTCAAACTTGTTGCCATAGTCCGAGAAGCAGACACAAATCATGATTCATCAACAGGGTTAGATAGTTCATCAAGCAGTAATAAGAAAACATTATTACGTGATGTTTTGTATAGTGTAATTTCCACAATCATCTCGGTCACTCTTATTTTCTTATTATGTATTTGGGTTCGGCACATGGCTAGATTCACTAAGCGCAAGACCGAGATGGAGATGATTTCTGAAGATATAAGTAGTAAAAATAAATCAGTGTCTCCTTCAGGTATGTGTCGTCACTTTTCAATCATTGATATAAGAGCAGCCACAATAAACTTTGATGATATTTTCGTTGTTGGAGTTGGAGGTTTTGGAAAGGTGTATCAAGGGTACATTGATGATGGTACAAAACCCGTGGCCATAAAACGTTTCATTCCAAATAGTTTACAAGGAGTTGAAGAGTTTAGGACAGAAGTTGAGATGTTGTCTCAACTTAGCCACCCTCATTTGGTGTCTCTGATTGGTTTTTGCAATGATGAAGATGATATGATAATAGTGTATGATTTCATGGCCAATGGGACCCTCCGAGACCATCTATATGGCTCTACAAACGCTCCCCTTTCGTGGAACCAACGGCTTGAGATTTGTATTGGGGCAGGGCTTGGGTTGGAGTATCTCCATTATGGTGCTAATTACAGTGTTATCCACCGTGATGTGAAAAGCTCTAACATTTTGTTGGATGAGAAATGGGTGGCTAAGATTTCGGATTTTGGGCTGTGCAAAATAGGACCAGATGGGGTATCAAAGTTCCATGTTACTACTCAAGTTAAGGGTAGTCTCGGATACTTGGACCCTGAATATTCGAAGACTAAACGGTTGACCCATAAGTCTGATGTGTATTCTTTTGGTGTGGTGTTGCTTGAAGTGTTGTGTGGGAGACCCCCTTTGCTACGTAAAGTGGAGGGCATGCAGAGAAGTTTAGTGGAGTGGGCCCAAACATGCCACAGTGAAGGTGGACCTCAAGCTCTATACCAAATGGTTGATCCCTTCGTTAGAGGAACCATTCTTCCAGAGTGTTTGGATAAGTTTGTTGAAATGGCATTGAATTGTGTTGTTGATGATGGAAATGAACGGCCATCAATCAGTGAGGTAGTTAAGGGCCTTCAGCTTGCATTGCAGCTGCAAGAACATTCAAGGTTCAGTGGGGCCCGCAGACCAAAGAATACAAAGGTTAATTTAGGAGAAGAATGA	1884	0.4103	MVPVRTNKFSSVAKSSGVKLFNMILFSIMFIIPVNSYPLTEDFAINCGSSFESNSIVGDRIWSRDIDSQHFSLLELQDQNHSSITAVSDPIVNHIPYGTARLSQYEFTYSFSVTVGPKFLRLYFHAASYRSFNRSKSLFSVKAGPYALLKGFNASRVAEEYGDSNKIVLMEYCINVEQGQRLNITFTPNLTKDAFAFINGIEVLSSFKHNLLCDKQNYSGFKLVAIVREADTNHDSSTGLDSSSSSNKKTLLRDVLYSVISTIISVTLIFLLCIWVRHMARFTKRKTEMEMISEDISSKNKSVSPSGMCRHFSIIDIRAATINFDDIFVVGVGGFGKVYQGYIDDGTKPVAIKRFIPNSLQGVEEFRTEVEMLSQLSHPHLVSLIGFCNDEDDMIIVYDFMANGTLRDHLYGSTNAPLSWNQRLEICIGAGLGLEYLHYGANYSVIHRDVKSSNILLDEKWVAKISDFGLCKIGPDGVSKFHVTTQVKGSLGYLDPEYSKTKRLTHKSDVYSFGVVLLEVLCGRPPLLRKVEGMQRSLVEWAQTCHSEGGPQALYQMVDPFVRGTILPECLDKFVEMALNCVVDDGNERPSISEVVKGLQLALQLQEHSRFSGARRPKNTKVNLGEE*	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g2549	627	ProSitePatterns	Protein kinases ATP-binding region signature.	330	353	IPR017441	GO:0005524
	Apr4g2549	627	SMART	serkin_6	324	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr4g2549	627	CDD	STKc_IRAK	339	600	-	-
	Apr4g2549	627	PANTHER	RECEPTOR-LIKE PROTEIN KINASE FERONIA	41	209	-	-
	Apr4g2549	627	PANTHER	RECEPTOR-LIKE PROTEIN KINASE FERONIA	243	609	-	-
	Apr4g2549	627	ProSiteProfiles	Protein kinase domain profile.	324	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr4g2549	627	SUPERFAMILY	Protein kinase-like (PK-like)	300	604	IPR011009	-
	Apr4g2549	627	Pfam	Malectin-like domain	45	212	IPR024788	-
	Apr4g2549	627	Gene3D	Transferase(Phosphotransferase) domain 1	401	620	-	-
	Apr4g2549	627	Gene3D	-	42	207	-	-
	Apr4g2549	627	ProSitePatterns	Peroxidases active site signature.	116	127	IPR019794	GO:0004601
	Apr4g2549	627	Gene3D	Phosphorylase Kinase; domain 1	282	400	-	-
	Apr4g2549	627	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	445	457	IPR008271	GO:0004672\|GO:0006468
	Apr4g2549	627	PANTHER	OS07G0166700 PROTEIN	41	209	IPR045272	GO:0004714\|GO:0006468
	Apr4g2549	627	PANTHER	OS07G0166700 PROTEIN	243	609	IPR045272	GO:0004714\|GO:0006468
	Apr4g2549	627	Coils	Coil	621	627	-	-
	Apr4g2549	627	Pfam	Protein tyrosine and serine/threonine kinase	330	598	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g2549	Apr-Chr4	34309140	34311382	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr4g2549	305	613	Receptor kinase-like Gene Family	AT3G51550	60.194	4.11e-125	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Apr4g2549		PK_Tyr_Ser-Thr	5.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g2549	-		-	adu:107486605	694.886