Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2546 ATGTTTATCAAGTATTTGGGCTTCTGCTGTTTGAAGCATACAAGTTCATCTCAGAGACAGTATCCAACAGTGATAGAAGAGCTACGCCATAAATTTTCTCTGGTCAAGCTTAGAAAATCAACCAACAACTTTGATGAAAACCGAATACTTGGAAGTGGAAGCATTGGTACTGTATATAAAGGTTCTCTCCAACTCGATGGTGCTACTGACGATAGAGTTGCAATCAAACAAATTGATGTGAGCAACAACCAAAATCTTAAAGAGTTCAAGAACGAAATTGAGATGCTATGCCAACTTCGTCATCCTAATTTGGTCAGTCTATTAGGATTTTGTGACCACAAAGACGAGAAGTATGTCGTATATGAGTACATGGCCAATGGATCTCTCCATGATCACCTATATTGTGGTGATGTGAAAAGGGAACCACTAACATGGAAGCAGAGGCTAAAGATCTGCATAGGAGCAGCACATGGACTACACTACCTTCACACAGGTACACATGGTTATGTGGCCCCTGAGATTTCACAAAACAATACACTAACAGATAAATGTGATGTTTACTCCTTTGGTGTTGTTCTACTAGAAGTGGTATGCACAGACAAGCTAAAATTTGTTGAGAAGAGGCAAAGGCACCCTGTTGAGGTGAATATTGATCCGAATCTCAAAGGAAATATTGCACCAGAGTGTTGGGAAGTATTTGTGGACATCACAGAAAGATGCTTGAACTATGATCCAAATGAGCGACCAACAATGGGTGAAGTGGAGGTGCAACTTGAGCTTGCACTGTCCCTGCAGGAAGAAGCAGATATCAGAAATACTTGTGATGATTATACCTTATTATCTATGACCATTATTAATTAA 861 0.3972 MFIKYLGFCCLKHTSSSQRQYPTVIEELRHKFSLVKLRKSTNNFDENRILGSGSIGTVYKGSLQLDGATDDRVAIKQIDVSNNQNLKEFKNEIEMLCQLRHPNLVSLLGFCDHKDEKYVVYEYMANGSLHDHLYCGDVKREPLTWKQRLKICIGAAHGLHYLHTGTHGYVAPEISQNNTLTDKCDVYSFGVVLLEVVCTDKLKFVEKRQRHPVEVNIDPNLKGNIAPECWEVFVDITERCLNYDPNERPTMGEVEVQLELALSLQEEADIRNTCDDYTLLSMTIIN* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2546 286 Pfam Protein tyrosine and serine/threonine kinase 169 257 IPR001245 GO:0004672|GO:0006468
Apr4g2546 286 Pfam Protein tyrosine and serine/threonine kinase 47 164 IPR001245 GO:0004672|GO:0006468
Apr4g2546 286 Gene3D Transferase(Phosphotransferase) domain 1 165 280 - -
Apr4g2546 286 PANTHER TYROSINE KINASE FAMILY PROTEIN 165 281 - -
Apr4g2546 286 PANTHER TYROSINE KINASE FAMILY PROTEIN 14 166 - -
Apr4g2546 286 SUPERFAMILY Protein kinase-like (PK-like) 17 255 IPR011009 -
Apr4g2546 286 Gene3D Phosphorylase Kinase; domain 1 4 123 - -
Apr4g2546 286 Gene3D Transferase(Phosphotransferase) domain 1 124 164 - -
Apr4g2546 286 ProSiteProfiles Protein kinase domain profile. 44 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2546 286 PANTHER OS07G0166700 PROTEIN 165 281 IPR045272 GO:0004714|GO:0006468
Apr4g2546 286 PANTHER OS07G0166700 PROTEIN 14 166 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2546 Apr-Chr4 34293194 34295821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2546 8 272 Receptor kinase-like Gene Family AT5G39000 36.858 1.13e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Apr4g2546 PK_Tyr_Ser-Thr 1.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2546 - - gmx:100819625 441.425