Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2543 ATGGCCTTTGAGTATACCTGGCACAGTATCATCTCAGAAAAATGTGATGTTTACTCATTTGGTATGGTTCTAGTAGACGTTCCTATTGAGGAGAATATTGATCCTAATATCAAAGGAAATATAGCACCAGAGTGTTGGCGAGTGTTTTTTTATATCACCCATAGATGCTTGAAGTTTGAACCAGATGAGCGACAAACGATGGGCGAAGTAGAGCGTACAAATCCACTCAGGAAACGCTCCCAAACAGTCATAGAAGAACTATGCCATAGATTTTCGGTGGCCGAGATAAGGAAATCAACAAACAACTTTGATGAAAAGCGAAAAATTGGAAGAGAAGACTTTAATGACATATACAAAGGTTGTCTCAAACTTAATGGAGCAAATGACATTTTTGTCAGAATCAAACGGTTGAGAAAGATGTTCGACCAAGGGGTGCTTGAGTTCAAGAAGGAAGTTGAGTTACTTTGCCAGCTTCGTCACCCGAATGTGGTTACTCTTATAGGATTTTGTGACCACAAAGACGAGAAAATTATTGTATACGAGTACGTGGCCAATGGTTCTCTTTATGATCACCTATATTGCAGTAACATGAAAATGGAACCACTCACATGGAAGCAAAGGCTTAAGATCTGCGTAGGAGTAGCACGTGGACTACACTACCTTCACACAGGTGCTAAGCGAACCATTTTTCACCGTGACATAAAACCCAGTAACATTCTTTTGAATAATAATATGGTGCCCAAACTCTCAAATTTTGAGCTTTCCTTACAGGGATCACATTGTACGTCAAAGCCAAAACCTACTGAAGTAGAAGTAGTTGCGGGTACCATTGGTTACATAGCTCCTGAGAATTTCCAAAACAAAAGCTTCTCAGATAAAAGTGATGTTTATTCCTTTGGTAAACTTCTACTAGAGATGGTATGCACGGAAAAGCGAAAGATTGTGGAGAGGCTGAGGCACCCTGTTGAGAGAAATATTGATCCGAATCTCAAAGGAAAGATTGTACCAGAGTGTTGGGAAGTATATATGGAAATGACACAAAGATGCTTGGAGTATGATCCAAATGAGCGACCAACAATGGGTGAAGTAGAGGTACAACTTGAGCATGCTCTATCAATGCAGGCAGAAGCTGATGACAAAAAGGCTAGTGGGGACTACTATTCCCTGTTATCCTTCACCATTATTAATCCTAGGAAATAG 1200 0.4017 MAFEYTWHSIISEKCDVYSFGMVLVDVPIEENIDPNIKGNIAPECWRVFFYITHRCLKFEPDERQTMGEVERTNPLRKRSQTVIEELCHRFSVAEIRKSTNNFDEKRKIGREDFNDIYKGCLKLNGANDIFVRIKRLRKMFDQGVLEFKKEVELLCQLRHPNVVTLIGFCDHKDEKIIVYEYVANGSLYDHLYCSNMKMEPLTWKQRLKICVGVARGLHYLHTGAKRTIFHRDIKPSNILLNNNMVPKLSNFELSLQGSHCTSKPKPTEVEVVAGTIGYIAPENFQNKSFSDKSDVYSFGKLLLEMVCTEKRKIVERLRHPVERNIDPNLKGKIVPECWEVYMEMTQRCLEYDPNERPTMGEVEVQLEHALSMQAEADDKKASGDYYSLLSFTIINPRK* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2543 399 SUPERFAMILY Protein kinase-like (PK-like) 1 72 IPR011009 -
Apr4g2543 399 SMART serkin_6 103 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2543 399 SUPERFAMILY Protein kinase-like (PK-like) 82 370 IPR011009 -
Apr4g2543 399 PANTHER OS07G0166700 PROTEIN 1 71 IPR045272 GO:0004714|GO:0006468
Apr4g2543 399 PANTHER OS07G0166700 PROTEIN 77 389 IPR045272 GO:0004714|GO:0006468
Apr4g2543 399 Pfam Protein tyrosine and serine/threonine kinase 106 366 IPR001245 GO:0004672|GO:0006468
Apr4g2543 399 Gene3D Phosphorylase Kinase; domain 1 88 182 - -
Apr4g2543 399 Gene3D Transferase(Phosphotransferase) domain 1 1 86 - -
Apr4g2543 399 Gene3D Transferase(Phosphotransferase) domain 1 183 389 - -
Apr4g2543 399 ProSiteProfiles Protein kinase domain profile. 103 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2543 399 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 71 - -
Apr4g2543 399 PANTHER TYROSINE KINASE FAMILY PROTEIN 77 389 - -
Apr4g2543 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2543 Apr-Chr4 34281001 34285534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2543 72 385 Receptor kinase-like Gene Family AT3G51550 41.994 7.36e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Apr4g2543 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2543 - - ahf:112797914 418.698