Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2539 ATGCAGTTTTCCATAATTGAATCACAGACTGAGAAACCATCTATCTTAGCCCACACTCTGAAATCTCTTTCACATTTCTCTTCAGGTTCACCTAATACTACTACTCCTTTTAGCTCCGCACGCATCTCTACCTCCAAATTCACCTACTCCTTCTCTGTCACTCACGGCCCATGGTTCCTTCGGCTTCACTTTAATCCAACATCCTATGACATCTTTGAACACTACAAGCCCCTCTTCTCTGTCAAAGTGGGCAACTTCACCCTTCTCAAGGACTTCAACCCCTCGCTTTGGGTTGTCAACGATGATGACACAATCATCAGAGAATTCTGTATCAGCAATGAAACAGCAGGTACGATACTAAACGTAAATTTCCTTCCTACCACCAATCACTCCGATGCCTATGCATTTGTCAACGGGATCGAGGTCGTGTCTATGCCTCCCTTTCTCTATTACAGTGATCCGACTGAGATATATACTCCTAATTTTAAGCTTGTTGGTTCTGACAACCAATACCAACTTTATAGTGACAAAGCTCTGGAGACACGTTACAGAGTCAAGGTTGGTGACATGCAGGTTCAACGAAACCAAGATACTGGTATGTTCCGTTATTGGGACTCCGATCGTCCCTACATTTTGAAGGAATATCCACAAAGTGTACAAAGTGACTATACACATCAACCAAACTATAAAAATGAGGTTGCTCCAAATTACACTGCACCGGCCATTGTATACATGACAGCTCGAAGCTATGGGATGGATGCAACCGAGGATTACAATGTAACTTGGGAGTTTGAAGTAGACCCGGAGTTTGTTTACATGGTGAGGTTACATTTCTGCGAGTTTGACTATCATGTTCATTATAAAGGCGACAGAGTTTTCCAGATTTTTATTGATGATAACTTGGTTGAGGAGCTCGCGGATGTGATAAACTGGAGTGGTGGTAACCTAATTCCTGTTTACAGGGATTATGCTGTGATTATGTTAGGCTCTAAAAATTCCAATCTTTCAATCAAGCTCCAACGACTGCCAAAGGGAGTTATCACTAGATACCGTGATGTCTTATTAAATGGTATCGAGATTCTCAAAATAAGTGACGACAATGACAATCTTGCTGAACCCAATCCCGATCCGCGTCTATCTCCCCACCAACAACAAATATTGCAAACTCAAACATCCAAACACAAAAGCCCCATCATCGTGATCATAACAGTTGCCGCAGTTTCAGGCCTCGTGCTATCATCTATTATTGGCGTCATAGTTTTTCAGCGAAGGAGAAGAAGAAGAGCCCATGACACGAAAGAAAACCCACGGAAGACGAAGACTGAAGGGTCATCTCTGCCATCCCATTTGTGCCGATACTTCACCATCGCAGAGATCAGAGCAGCCACAAACAACTTGGACGATGCTTCCATCGTCGGGGTTGGAGGGTTCGGCAACGTGTACAAGGGTCACATCGATAGGGACACACCCGTCGCTATCAAACGCCTCAAACCGGGTTCTGACCAAGGTGACCCCGAGTTCAAGAACGAGATCGTGATGCTCTCCCAGCTTCGTCATCCTCACTTGGTGCCCCTATTTGGATACTGCAATGACGGCGCTGAGATGATCGTCGTCTATGATTTCATGCACCGTGGCTCTTTCCGCGATTATCTCTACGGTTCTGATAACCCTCCACTTTCGTGGAAGCAGAGACTTCAAATCTTATTGGGTGCTTCAAGAGGGCTGCATTATCTTCATGCGGGTGCGAAGCAGAGTATCATTCACCGTGACGTGAAGAGCACAAACATCTTGTTGGATGAAAATTGGGAGGCTAAGGTTTCTGACTTGGGGTTATCCAAAGTGGGACCCAATGGGGTGTCGAGGACACACGTCACCACCACGGTGAAGGGGAGCGTCGGGTATTTGGACCCACAATACTACAAGAGTCAAAGGTTGACTCTTAAGTCTGACGTGTACTCATTCGGTGTGGTACTTCTTGAAGTACTGTGTGCGAGGCCACCTTTAGATCATTCGTTGGACAATGAGAAGGTTTGTTTGGTTGATTGGGTACAGAGATGTTATGATGAAGCAGAGATTCATCTCACGGTGGATCCATTTCTAAAGGATTCTATTACAGCTGAATGTTTGAAATGTTATAGCGACATGGCTTTGAGTTGTTTGCTTGATGATCCGAAACAACGGCCCTCAATGACCGATGTAATTGAGGCCCTAGAGCTTGCAATTCACTTGGCAGAGGATCAGCATCATCAAAATATCTCAATTAGTTTTTAG 2271 0.4478 MQFSIIESQTEKPSILAHTLKSLSHFSSGSPNTTTPFSSARISTSKFTYSFSVTHGPWFLRLHFNPTSYDIFEHYKPLFSVKVGNFTLLKDFNPSLWVVNDDDTIIREFCISNETAGTILNVNFLPTTNHSDAYAFVNGIEVVSMPPFLYYSDPTEIYTPNFKLVGSDNQYQLYSDKALETRYRVKVGDMQVQRNQDTGMFRYWDSDRPYILKEYPQSVQSDYTHQPNYKNEVAPNYTAPAIVYMTARSYGMDATEDYNVTWEFEVDPEFVYMVRLHFCEFDYHVHYKGDRVFQIFIDDNLVEELADVINWSGGNLIPVYRDYAVIMLGSKNSNLSIKLQRLPKGVITRYRDVLLNGIEILKISDDNDNLAEPNPDPRLSPHQQQILQTQTSKHKSPIIVIITVAAVSGLVLSSIIGVIVFQRRRRRRAHDTKENPRKTKTEGSSLPSHLCRYFTIAEIRAATNNLDDASIVGVGGFGNVYKGHIDRDTPVAIKRLKPGSDQGDPEFKNEIVMLSQLRHPHLVPLFGYCNDGAEMIVVYDFMHRGSFRDYLYGSDNPPLSWKQRLQILLGASRGLHYLHAGAKQSIIHRDVKSTNILLDENWEAKVSDLGLSKVGPNGVSRTHVTTTVKGSVGYLDPQYYKSQRLTLKSDVYSFGVVLLEVLCARPPLDHSLDNEKVCLVDWVQRCYDEAEIHLTVDPFLKDSITAECLKCYSDMALSCLLDDPKQRPSMTDVIEALELAIHLAEDQHHQNISISF* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2539 756 SUPERFAMILY Protein kinase-like (PK-like) 440 739 IPR011009 -
Apr4g2539 756 Pfam Malectin-like domain 32 362 IPR024788 -
Apr4g2539 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Apr4g2539 756 Gene3D - 178 365 - -
Apr4g2539 756 Gene3D - 7 145 - -
Apr4g2539 756 ProSitePatterns Protein kinases ATP-binding region signature. 472 494 IPR017441 GO:0005524
Apr4g2539 756 Gene3D Transferase(Phosphotransferase) domain 1 542 754 - -
Apr4g2539 756 Pfam Protein tyrosine and serine/threonine kinase 471 737 IPR001245 GO:0004672|GO:0006468
Apr4g2539 756 ProSiteProfiles Protein kinase domain profile. 466 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2539 756 PANTHER OS07G0166700 PROTEIN 31 748 IPR045272 GO:0004714|GO:0006468
Apr4g2539 756 Gene3D Phosphorylase Kinase; domain 1 426 541 - -
Apr4g2539 756 SMART serkin_6 466 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2539 756 CDD STKc_IRAK 472 738 - -
Apr4g2539 756 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 31 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2539 Apr-Chr4 34238794 34241064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2539 36 754 Receptor kinase-like Gene Family AT3G51550 45.213 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Apr4g2539 Malectin_like 2.6e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2539 - - aprc:113862548 1532.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2539 4 34238794 34241064 Apr4g2539 4 34238794 34241064 ECH
Apr6g0271 6 2789018 2790073 Apr4g2539 4 34238794 34241064 PCT