Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2525 ATGTTTTCTTCTTCTAATTTAGTCGTCAAATGGAGGTTCTTTCATAAACCCATGACCCTTCTGCACCTCTTCACTCTCTTATGGGTCTTCACCCACTCTCTCAACGATGCCGTTTTGGCCGATTCCGACAAATCAGTGCTGCTTCAGCTCAAGAACTCGCTCTCCGATCCTTCGGGTTTGCTCTCCAACTGGAACGGTTCCGACCACTGTCACTGGTTCGGTGTCCTCTGCGACTCAACCACGCGCCGTGTCGTCGCGATCAACGTCACTGGCAACGGAGGTAACCGAAAACCCCCTTCTCCGAGCTGCGAGGGTTTTCGAGGTGCATTGTTTGGGAAGGTTTCACCTTTGTTCAGTGAGCTCACCGAACTTAGGGTTTTATCCCTTCCCTTCAACGGTCTGGTGGGTGAGATTCCTGGTGAAATTTGGGGCATGGACAGGTTGGAGGTTCTTGATCTCGAGGGTAATTTGATAACTGGGTTTCTCCCTGTTCGGTTTAGTGGGTTGAGGAATTTGAGGGTTCTTAATCTAGGGTTTAATAGAATTGTTGGCGAGATACCGAGTTCACTGTCAAGTGTTGCAACTTTGCAGGTTCTGAATTTGGCTGGAAATGGCATTAATGGGTCTGTTCCTGGTTTTGTTGGTAGGCTTAGAGGGGTGTATTTGTCTTTTAACCTGCTTGGTGGGACTATTCCTCAGGAGATAGGGGATGATTGTGGCAGGCTGGAGCATCTTGATTTGTCTGGCAATTTCTTGGTTCAAGGGATTCCAGGGAGTTTGGGGAATTGTAGTGGGTTGAGGACCCTTTTGCTGTATTCGAATATATTGGAAGATGCTATTCCTGCTGAGCTTGGTAAGCTTAAGAAGCTCGAGGTGTTGGATGTTTCTAGGAATACACTTGGCAGTTCAGTGCCCCGGGAGCTTGGGAATTGTATAGATTTGTCAGTACTTGTTCTGTCCAATCTTTTTAATCCACTTCCGAACGTCAATGGTACGGGCAGGGACCTGGGGATGGAGCAGCTGGTTTCTATAAATGATGAGTATAATTATTTTGAAGGTCCCATTGCTGTGGAAATTATGAGCCTTCCTAAGCTGAAAGTACTGTGGGCGCCTAGGGCAAATCTGGAAGATAGTTTTCCAAGTGGTTGGGGCGCATGTGATAACTTGGAGATGCTCAACTTGGCTCAAAATGATTTCACTGGGGATTTTCCTAATCAGCTTAGTCGCTGCAAGAAGCTCCAATTTCTTGATTTAAGCTCAAACAACCTTACAGGAAAGCTTGCTGAAGAACTTACTGTTCCCTGTATGACTGTGTTTGATGTTAGTGGGAATGTCTTATCTGGACCAATTCCTGAATTCTCTGTTAGTGCGTGTAATTCAGTTCCTTCCTGGAATGGAAATCTGTTTGAAACCGATGATAGAGCCCTTCCATATGAATCCTTTTTTGCATCAAAGGTTCTTGGAAGCCCCCCTTTGTTGTCACTTGGGGAAGTTGGCCGTTCCGTTATTCACAATTTTGGCCAAAACAACTTCATTAGCATGGAGTCGTTGCCAATAGCACGCGACCGGCTGGGAAAGGGGTTGGTTTACGCAATTCTTGTTGGAGAAAACAAGTTGACAGGACCATTTCCTACAAATTTATTTGAGAAGTGTGATGGATTAAATGCATTGCTTTTAAATGTGAGTTATACCATGTTATCGGGTCAGATTCCTTCCAAGTTTGGTGGAATGTGCCGATCATTAAAGTTCTTGGATGCATCTGGTAATCAGATTACTGGGCCAATCCCCCTTGGTTTGGGGGACATGATCTCTCTTGTTTCTCTGAATCTTAGTCAGAACCGTTTACAAGGTCAGATTCCCATCACCCTTGGCCAGTTGAAGAATCTGAAGTTTCTCTCTTTGGCGGATAATAACATGAGTGGCTCCATCCCTTCCAGCTTTAAGCAGCTGTATTCTCTAGAAGTCTTGGACCTTTCTTCAAACTCTCTTACTGGTGAAATTCCGGAAGGTATTGAGAACTTGAAAAATCTGTCTGATGTTTTGCTCAATAATAACAAACTTTCTGGACAAATTCCTACTGGTTTGGCAAATGTTACTACACTGTCAGCATTTAATGTGTCATTCAATAACTTATCTGGATCTTTGCCTTCAAATAGTAATTCAATAAAATGCAGCAGTGCTGTTGGGAATCCATTTTTACGTTCTTGCAATGGAGTTTCTCTTGCTGTTCCATCAACAGATCAAGTGCTTGATAATTCTAATTCTGATACTGCTGCACCCCCAGAAGCCACCAGCAGAAAGGGCGGGAATGGTTTCAATTCTATTGAAATAGCGTCTATAACTTCTGCATCAGCCATTGTTTCTGTTCTTCTAGCCCTAATTATCCTTTTCATTTATACACGGAAGTGGAACCCAAGGTCCAGGGTTATTGGGTCTACCAGAAAAGAAGTCACTGTGTTTACTGATATTGGGGTCCCATTGACATTTGAAAATGTTGTCCGTGCCACAGGAAATTTCAATACAAGCAACTGCATTGGGAATGGGGGATTTGGGGCAACCTATAAGGCTGAGATATCACCAGGAAACTTGGTGGCAATAAAGCGTCTGGCAGTTGGGCGATGCCAAGGTGTTCAACAATTTCATGCTGAGATTAAGACCCTTGGAAGGCTTCGTCATCCAAATCTTGTCACTCTGATTGGTTATCATGCTAGCGAGACTGAGATGTTTCTCATATACAACTATTTGCCAGGTGGTAATCTGGAGAAGTTTATCCAAGAGAGGTCCACAAGGTTTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGATATAGCCCGTGCACTTGCATACCTTCATGATCAGTGTGTGCCGCGGGTTCTTCATCGGGATGTCAAGCCCAGTAATATCTTGTTAGATGATGATTATAATGCTTATCTGTCTGACTTTGGATTGGCTAGACTTCTGGGAACCTCAGAAACCCACGCTACCACTGGTGTAGCAGGTACGTTTGGTTATGTGGCTCCTGAATATGCCATGACTTGCCGTGTTTCCGACAAGGCTGATGTGTACAGCTATGGTGTGGTGCTTCTAGAGTTACTCTCTGACAAGAAGGCATTGGATCCTTCATTTTCTTCATACGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCAACTGAGGGAAGGCAAGGCAAAGGACTTTTTCGCCACCGGCTTATGGGAAGCTGGGCCTGCAGATGATTTGGTAGAGGTCCTACACTTGGCTGTTGTGTGTACGGTTGACTCTCTCTCTACCAGACCTTCAATGAAACATGTTGTACGGCGGCTTAAGCAACTTCAACCGCCATCATGCTAG 3357 0.4465 MFSSSNLVVKWRFFHKPMTLLHLFTLLWVFTHSLNDAVLADSDKSVLLQLKNSLSDPSGLLSNWNGSDHCHWFGVLCDSTTRRVVAINVTGNGGNRKPPSPSCEGFRGALFGKVSPLFSELTELRVLSLPFNGLVGEIPGEIWGMDRLEVLDLEGNLITGFLPVRFSGLRNLRVLNLGFNRIVGEIPSSLSSVATLQVLNLAGNGINGSVPGFVGRLRGVYLSFNLLGGTIPQEIGDDCGRLEHLDLSGNFLVQGIPGSLGNCSGLRTLLLYSNILEDAIPAELGKLKKLEVLDVSRNTLGSSVPRELGNCIDLSVLVLSNLFNPLPNVNGTGRDLGMEQLVSINDEYNYFEGPIAVEIMSLPKLKVLWAPRANLEDSFPSGWGACDNLEMLNLAQNDFTGDFPNQLSRCKKLQFLDLSSNNLTGKLAEELTVPCMTVFDVSGNVLSGPIPEFSVSACNSVPSWNGNLFETDDRALPYESFFASKVLGSPPLLSLGEVGRSVIHNFGQNNFISMESLPIARDRLGKGLVYAILVGENKLTGPFPTNLFEKCDGLNALLLNVSYTMLSGQIPSKFGGMCRSLKFLDASGNQITGPIPLGLGDMISLVSLNLSQNRLQGQIPITLGQLKNLKFLSLADNNMSGSIPSSFKQLYSLEVLDLSSNSLTGEIPEGIENLKNLSDVLLNNNKLSGQIPTGLANVTTLSAFNVSFNNLSGSLPSNSNSIKCSSAVGNPFLRSCNGVSLAVPSTDQVLDNSNSDTAAPPEATSRKGGNGFNSIEIASITSASAIVSVLLALIILFIYTRKWNPRSRVIGSTRKEVTVFTDIGVPLTFENVVRATGNFNTSNCIGNGGFGATYKAEISPGNLVAIKRLAVGRCQGVQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRFVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMQLREGKAKDFFATGLWEAGPADDLVEVLHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2525 1118 Gene3D Transferase(Phosphotransferase) domain 1 915 1115 - -
Apr4g2525 1118 Gene3D Ribonuclease Inhibitor 39 216 IPR032675 -
Apr4g2525 1118 SUPERFAMILY RNI-like 114 457 - -
Apr4g2525 1118 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Apr4g2525 1118 Pfam Leucine rich repeat 604 663 IPR001611 GO:0005515
Apr4g2525 1118 Gene3D Phosphorylase Kinase; domain 1 802 914 - -
Apr4g2525 1118 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 18 1117 - -
Apr4g2525 1118 SUPERFAMILY Protein kinase-like (PK-like) 821 1110 IPR011009 -
Apr4g2525 1118 Pfam Protein kinase domain 841 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2525 1118 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 18 1117 - -
Apr4g2525 1118 SMART LRR_typ_2 145 168 IPR003591 -
Apr4g2525 1118 SMART LRR_typ_2 169 193 IPR003591 -
Apr4g2525 1118 SMART LRR_typ_2 239 263 IPR003591 -
Apr4g2525 1118 SMART LRR_typ_2 287 311 IPR003591 -
Apr4g2525 1118 SMART LRR_typ_2 650 674 IPR003591 -
Apr4g2525 1118 SMART LRR_typ_2 602 626 IPR003591 -
Apr4g2525 1118 SMART LRR_typ_2 214 238 IPR003591 -
Apr4g2525 1118 PRINTS Leucine-rich repeat signature 413 426 - -
Apr4g2525 1118 PRINTS Leucine-rich repeat signature 650 663 - -
Apr4g2525 1118 Gene3D Ribonuclease Inhibitor 510 742 IPR032675 -
Apr4g2525 1118 MobiDBLite consensus disorder prediction 748 767 - -
Apr4g2525 1118 CDD STKc_IRAK 845 1113 - -
Apr4g2525 1118 Gene3D Ribonuclease Inhibitor 217 332 IPR032675 -
Apr4g2525 1118 Gene3D Ribonuclease Inhibitor 335 509 IPR032675 -
Apr4g2525 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Apr4g2525 1118 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Apr4g2525 1118 ProSiteProfiles Protein kinase domain profile. 839 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2525 1118 ProSitePatterns Protein kinases ATP-binding region signature. 845 867 IPR017441 GO:0005524
Apr4g2525 1118 SMART serkin_6 839 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2525 1118 SUPERFAMILY L domain-like 532 737 - -
Apr4g2525 1118 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515
Apr4g2525 1118 Pfam Leucine Rich repeat 410 425 IPR001611 GO:0005515
Apr4g2525 1118 ProSiteProfiles Leucine-rich repeat profile. 652 675 IPR001611 GO:0005515
Apr4g2525 1118 SMART LRR_sd22_2 650 676 - -
Apr4g2525 1118 SMART LRR_sd22_2 145 166 - -
Apr4g2525 1118 SMART LRR_sd22_2 169 195 - -
Apr4g2525 1118 SMART LRR_sd22_2 239 258 - -
Apr4g2525 1118 SMART LRR_sd22_2 410 433 - -
Apr4g2525 1118 SMART LRR_sd22_2 121 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2525 Apr-Chr4 34115387 34119640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2525 37 1118 Receptor kinase-like Gene Family AT3G02130 63.506 0.0 1315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Apr4g2525 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2525 - - gmx:100803891 1892.09