Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2521 ATGGCGTTCGTCAATAAAATTGGAAATCTACTCAAGAACTCTGCTGTCAAGCATATCAATCAAGAAGTTTCTATGTCTACTCCGTCGGTTTTCCAAGCAATTCGATCCATGTCATCTGGAAAGCTTTTTGTTGGAGGTATCTCTTACAACACTGATGATATGAGTCTGCGGGAAGCTTTTGCTCGCTATGGAGAAGTAATTGATGCTAGGGTTATTATGGACCGTGAAACTGGTAGGTCAAGAGGTTTTGGCTTCATAACTTTTGCAACAAGTGAGGATGCATCTTCTGCTATTCAGGGCATGGATGGCCAGGATCTTCATGGTCGGAGGATACGAGTGAATTATGCTGCAGAAAGGTCACGTCCAGGGTTTGGTGGTGGCGGCGGCTATGGTGGTGGCGGATTTGGTGGTGGTGGCAGTGGCTATGGTGGAGGCAGCTATGGTGGTGGTAATTATCAAGGCAATGACAATAGGGGTGGAAGTGATGGTTATGGTGCTATGAGCAGCTATGGTGGTGGCAATGCTGAAACTAGTTACTCTGGTGGTGGGGGTGCTAGTAATTACCAATTCAATGTAAATTCTGGTGGAGATTTTGGCCCTGCTAGCAGTGAACTAAGCAACAAGTCTGGTTTGCAATATGATGGTCAATTTGGTAGCAACCAAAATGACAGAACAGGTGCAGACAATGATGAATTCAGTGAGCCACTTGAAGACAATCATGTGAGGGAGAACAACGACGAACCTGATGACTTCGCCCAGACCCGGGGGTGA 771 0.463 MAFVNKIGNLLKNSAVKHINQEVSMSTPSVFQAIRSMSSGKLFVGGISYNTDDMSLREAFARYGEVIDARVIMDRETGRSRGFGFITFATSEDASSAIQGMDGQDLHGRRIRVNYAAERSRPGFGGGGGYGGGGFGGGGSGYGGGSYGGGNYQGNDNRGGSDGYGAMSSYGGGNAETSYSGGGGASNYQFNVNSGGDFGPASSELSNKSGLQYDGQFGSNQNDRTGADNDEFSEPLEDNHVRENNDEPDDFAQTRG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2521 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Apr4g2521 256 SUPERFAMILY RNA-binding domain, RBD 24 150 IPR035979 GO:0003676
Apr4g2521 256 MobiDBLite consensus disorder prediction 199 226 - -
Apr4g2521 256 Gene3D - 11 136 IPR012677 -
Apr4g2521 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Apr4g2521 256 MobiDBLite consensus disorder prediction 227 256 - -
Apr4g2521 256 SMART rrm1_1 41 114 IPR000504 GO:0003723
Apr4g2521 256 MobiDBLite consensus disorder prediction 199 256 - -
Apr4g2521 256 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 255 - -
Apr4g2521 256 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2521 Apr-Chr4 34081557 34085019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2521 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 1.73e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2521 K12741 - gmx:100807155 332.798