Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2510 ATGGCCAACTCTCACTGTTTGGTTCCATTGACCCTTTTAATGGTTCTCTTCGTACAAGCCTCGTCAGCTGCCATTGACGCTCAATGGCATGATGCTCATGCAACCTTCTATGGTGACATGGCGGGTGGAGATACCATGCAGGGTGCTTGTGGTTATGGTAATCTCTTCGAGCAAGGGTATGGACTTGAAACCACAGCACTAAGCACAGCTCTATTCAACAATGGGGGGGCTTGTGGTGCATGTTTCGAGATCAAGTGTGTGAACGACCCACAATGGTGCATAAAGAATGCTGGCACAATCAAAGTAACCGCTACAAATTTTTGTCCTCCAAATTATTCAAAACCTGAAGGAAATTGGTGCAATCCTCCACAAAAACACTTTGATTTGTCCATGAAAATGTTCACCACTATTGCCATATACAAAGCTGGGATAATCCCAGTTAAATATCGTCGAATTCCATGCACCAAAATTGGTGGTGTCAAATTTGAGATGAGAGGGAACCCTTATTGGTTGCTGGTTTTGGTGTACAATGTTGGCAATGCTGGTGAAGTCTCTAAGGTTAGCATCAAAGGGTCTAACACTGATTGGCTTCCTATGTCACGCAATTGGGGACAAAATTGGCTTACGGGTCAGAATTTAGTAGGACAAGCCTTGTCATTTATGGTTACTACTAGTGATGGTAAAATGTTGAAGTTTAATAATGTTGCACCTTCTCAGTGGCAATTAGGACAGACCTACAAGGGCCACAAAAATTTTTAG 759 0.4295 MANSHCLVPLTLLMVLFVQASSAAIDAQWHDAHATFYGDMAGGDTMQGACGYGNLFEQGYGLETTALSTALFNNGGACGACFEIKCVNDPQWCIKNAGTIKVTATNFCPPNYSKPEGNWCNPPQKHFDLSMKMFTTIAIYKAGIIPVKYRRIPCTKIGGVKFEMRGNPYWLLVLVYNVGNAGEVSKVSIKGSNTDWLPMSRNWGQNWLTGQNLVGQALSFMVTTSDGKMLKFNNVAPSQWQLGQTYKGHKNF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2510 252 SMART dpbb_1 64 149 IPR007112 -
Apr4g2510 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Apr4g2510 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Apr4g2510 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Apr4g2510 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Apr4g2510 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Apr4g2510 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Apr4g2510 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Apr4g2510 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Apr4g2510 252 PANTHER EXPANSIN-A15 12 249 IPR002963 GO:0009664
Apr4g2510 252 SUPERFAMILY PHL pollen allergen 158 248 IPR036749 -
Apr4g2510 252 Gene3D - 15 155 IPR036908 -
Apr4g2510 252 SUPERFAMILY Barwin-like endoglucanases 14 177 IPR036908 -
Apr4g2510 252 PANTHER EXPANSIN 12 249 - -
Apr4g2510 252 Gene3D - 159 252 IPR036749 -
Apr4g2510 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Apr4g2510 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Apr4g2510 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Apr4g2510 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Apr4g2510 252 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Apr4g2510 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Apr4g2510 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Apr4g2510 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Apr4g2510 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Apr4g2510 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Apr4g2510 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2510 Apr-Chr4 33971591 33972576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2510 18 252 Expansin Gene Family AT5G39300 64.255 1.52e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2510 - - gmx:100799337 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2510 4 33971591 33972576 Apr4g2510 4 33971591 33972576 ECH