Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g2507 | ATGGAATACACAAGTTGGCCTGAATTGCAGCAAATGCAAACTCAAAATCCGCCCTCCTCTTACCAACAACCCTCATCATATCCTCATGCATCATCTTTTACTACCCATTACCTCTCTTACCCTCAAAACCCTAACCCTAACTCATCTTACTCTATCCCTCAATCTGCTACTGTTCTCGAACCTTCCCTCAACCCTCCTGGGGTTGATTCATATATCCCATTGAACTCCACTAACCCGATTACCCATTTGGGTCACGAAACCCTTCCCAATTTATCGTACGGTCAAAGCCATGTTGTGGCTGATTCGAACTCGTTGGTGGCATCTTCTGGCTTCTACTTCGACCCAAATTCTCAGAATTGGGCTGCAAGAGAAGCTGTTAGGCAATATGGTACTGACCCTGCTACCTATGCACCTGGCATCTCAATGCCATCAAATGGCTCAGAACAATTGGCTATGGAAAATCCTAACTCCACTTGGTGGACAAATACCGTAACTCAACTTCATAGCAATGGAACATGGAAGAAACACCAAAAGAAAGTTAAAACTAAGATTGTGCACTCCGCTTATTGTGAAGTTTGCAAAGTAGATTGTACCAGCAAGGAAGTACTAGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACTTGGATAAACTAAGAGAATCATTGAAACCAACCCAAGTTGAACCGGCTGGGTCATCTAGTCCTGTTATAGGACCCCAATTACCGAACGAGAAGAGCAAATCTATCAGTGGGCATAAGAGTAAGCGGAAAACAGTTGAAACTGCAGAGGATTTGGAGAAAAAGAAAAAGAAGGTTCTTGATGGGGGGGCAGCAGCTGAAGCAGTTAGAATATGTGGTATATGTAACGTGGTTTGTAATAGTGAAACAGTTTATAATTATCATCTTGCAGGACAAAAGCATGCTGCTATGCTGAAGAAAGCATCTAATCATACATAA | 960 | 0.424 | MEYTSWPELQQMQTQNPPSSYQQPSSYPHASSFTTHYLSYPQNPNPNSSYSIPQSATVLEPSLNPPGVDSYIPLNSTNPITHLGHETLPNLSYGQSHVVADSNSLVASSGFYFDPNSQNWAAREAVRQYGTDPATYAPGISMPSNGSEQLAMENPNSTWWTNTVTQLHSNGTWKKHQKKVKTKIVHSAYCEVCKVDCTSKEVLDQHKLGKKHKKNLDKLRESLKPTQVEPAGSSSPVIGPQLPNEKSKSISGHKSKRKTVETAEDLEKKKKKVLDGGAAAEAVRICGICNVVCNSETVYNYHLAGQKHAAMLKKASNHT* | 320 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g2507 | 319 | MobiDBLite | consensus disorder prediction | 223 | 265 | - | - | |
| Apr4g2507 | 319 | MobiDBLite | consensus disorder prediction | 227 | 248 | - | - | |
| Apr4g2507 | 319 | SMART | c2h2final6 | 188 | 212 | IPR013087 | - | |
| Apr4g2507 | 319 | SMART | c2h2final6 | 284 | 308 | IPR013087 | - | |
| Apr4g2507 | 319 | PANTHER | - | 25 | 316 | - | - | |
| Apr4g2507 | 319 | PANTHER | ZINC FINGER RNA-BINDING PROTEIN | 25 | 316 | - | - | |
| Apr4g2507 | 319 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Apr4g2507 | 319 | SUPERFAMILY | beta-beta-alpha zinc fingers | 186 | 219 | IPR036236 | - | |
| Apr4g2507 | 319 | SUPERFAMILY | beta-beta-alpha zinc fingers | 282 | 314 | IPR036236 | - | |
| Apr4g2507 | 319 | Gene3D | Classic Zinc Finger | 182 | 218 | - | - | |
| Apr4g2507 | 319 | Gene3D | Classic Zinc Finger | 251 | 316 | - | - | |
| Apr4g2507 | 319 | SMART | ZnF_U1_5 | 185 | 219 | IPR003604 | GO:0003676|GO:0008270 | |
| Apr4g2507 | 319 | SMART | ZnF_U1_5 | 281 | 315 | IPR003604 | GO:0003676|GO:0008270 | |
| Apr4g2507 | 319 | Pfam | Zinc-finger of C2H2 type | 286 | 308 | - | - | |
| Apr4g2507 | 319 | Pfam | Zinc-finger of C2H2 type | 189 | 212 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr4g2507 | Apr-Chr4 | 33942419 | 33945294 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr4g2507 | 190 | 318 | C2H2 Transcription Factor Family | AT5G61190 | 29.371 | 3.16e-08 | 53.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr4g2507 | - | - | gmx:100803425 | 373.629 |