Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2498 ATGCCCTTCACCTCCTCTCTCCTTCGGTGGATTGGTGGGAAATTGTGCTCAAAGAACTCTGTGAACAATGGAGATAGTGGCAGCGATAGTCATACTACTGTCGCCGCCGTACTGGATGATAATCCGGTTAGCAGTGCGGTGGAGTGTTACGCCTGCACGCAGTATGGCGTGCCGATGTTTCATTCCACAAGCTGCGATGGATTTCATCAACCACAGTGGGAGGCCTCCGCTGGGTCCTCTCTAATTCCGATCCAGAACCGGCTGAATAAGGTTTCGGGCTTTCGGGTCGCGTCCAGGTCGAACTCGGGACCGTTCGGGCGGGTTTTGGATCCGAGGAGCAAGCGCGTGCAGGTGTGGAACCGCGCGTTGTTGCTGGCGCGTGGGGTGGCGCTGGCTATCGACCCGCTGTTTTTCTACGCTCTGTCGATCGGAAGAGAGGGGTCGCCGTGTCTGTACATGGACGGAGGGTTGGCGGCGTTGGTGACGGTGGCACGCACGGGTGTGGACGCGGTGCATTTGTTTCACGTGTGGCTGCAGTTCAGGCTGGCGTACGTGTCGAGAGAATCGTTGGTGGTTGGGTGCGGGAAACTCGTGTGGGACGCACGCGCCATCGCGTCGCATTACCTGCGATCCTTGAAGGGGTTCTGGTTCGACGCCTTCGTGATCCTCCCCGTTCCGCAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAGAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGCTTTGGTCTAAATCTCATAGCTTATTTCATTGCATCTCATGTTGCTGGAGGATGCTGGTATGTCCTTGCAATTCAACGTGTCGCGTCGTGCCTCCGGCAGCAGTGTGAAAGAACTCATGGATGCAATCTCTCTGTGTCATGCTCAGAGGAAGTATGCTACCAGTTTTTGTTACCAGCAGGCACACCAGGAAATCCATGTGGTGGAAACTCCACTGTTGTTGTAAGGAAACCTTTGTGCTTAGATGTTCAAGGACCTTTCAAATATGGGATCTACCAATGGGCTCTTCCAGTAATATCTAGCAACTCTTTGGCTGTCAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTCGGAAATGATCTTGAGCCAACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATAGTACTCAGTGGACTAATGCTTTTCACTTTGTTGATTGGTAACATCCAGGTATTCTTACATGCAGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGTCGTGACATGGAGTGGTGGATGCGGCGGAGGCAGTTGCCATCCCGATTAAGGCAAAGAGTTCGCCATTTTGAACGTCAGAGATGGGCAGCCATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGACTGAGGAGGGACATCAAGCGCTATCTTTGCTTGGACCTCATTAAAAAGGTACCATTGTTCCACAACTTGGATGATCTTATTCTTGACAACATATGTGACAGGGTGAAGCCATTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCCTTGTCCGTGGCCGCATAAAGCGCCACCAAAGTCTTAGCAAAGGCATGGTTGCATTAAGCAATCTTGAACCAGGAGGATTCTTAGGTGATGAGCTACTTTCATGGTGCCTTCGCCGGCCGTTTATCGACCGGCTTCCGGCGTCGTCAGCCACATTTGTATGTCTTGAATCAGTGGAAGCCTTTGGTCTTGATGCTGATCACTTGAGGTACATCACTGATCATTTTCGGTACAAATTTGCCAATGAGAGGCTGAAGAGAACAGCAAGATACTATTCATCAAATTGGAGAACATGGGCTGCTGTTAACATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACTCCTGTAAGGGAACATGGAGGCACTGAGCGCAGGCTCTTGCAATATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA 2034 0.4985 MPFTSSLLRWIGGKLCSKNSVNNGDSGSDSHTTVAAVLDDNPVSSAVECYACTQYGVPMFHSTSCDGFHQPQWEASAGSSLIPIQNRLNKVSGFRVASRSNSGPFGRVLDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAALVTVARTGVDAVHLFHVWLQFRLAYVSRESLVVGCGKLVWDARAIASHYLRSLKGFWFDAFVILPVPQVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERTHGCNLSVSCSEEVCYQFLLPAGTPGNPCGGNSTVVVRKPLCLDVQGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFLVRGRIKRHQSLSKGMVALSNLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESVEAFGLDADHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVREHGGTERRLLQYAAMFMSIRPHDHLE* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2498 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 226 677 - -
Apr4g2498 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 52 227 - -
Apr4g2498 677 SUPERFAMILY Voltage-gated potassium channels 110 411 - -
Apr4g2498 677 CDD CAP_ED 490 600 IPR000595 -
Apr4g2498 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 52 227 - -
Apr4g2498 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 226 677 - -
Apr4g2498 677 Gene3D Jelly Rolls 488 606 IPR014710 -
Apr4g2498 677 ProSiteProfiles cAMP/cGMP binding motif profile. 490 600 IPR000595 -
Apr4g2498 677 SMART cnmp_10 490 616 IPR000595 -
Apr4g2498 677 SUPERFAMILY cAMP-binding domain-like 417 604 IPR018490 -
Apr4g2498 677 Pfam Ion transport protein 117 408 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr4g2498 677 Gene3D Helix hairpin bin 416 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2498 Apr-Chr4 33874119 33880027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2498 40 677 Ion Channels AT5G15410 75.220 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2498 K05391 - gmx:100798823 1204.89