Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2497 ATGGGGTTGAAATTTACAAAGCAGGGTCCACCCAAAGTTGATAGCCTAAGTTTACATCATCACATGATCAATTACCTTAGCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGAAGAAGAATGCTAATTGATGGTTATGATCTTGACATGTCATATATCACAGACCGAGTATTAGCAATGTCATTTCCTGCAGAACGAATGCGAGCAATGTATCGAAATCCTCTGTGGCAGGTCAAATCTGTGTTGGACATGAGACATACAGAGCATTATAAGATATATAATCTCTGTATAGAAGAAAGTTATGATCCAGCACACTTCTATGGACGCGTGGAATCATATCCCTTTGATGACAACCATGTGCCGTCTCTTCAAATGATCAAAGCTTTCTGTGAAAGTGTGGATTCATGGCTGTCACGTGACCCAAAAAATATTGCTGTTATTCATTGCATGGCAGGGAAAGGTAGAACTGGATTAATGGTGTGTTCATACTTAACTTATTGCGGCATGTCAGCTGATGATGCTCTTCAATTATATGCAGACAGAAGGACAACCAACAATGAAGGAGTATCAATACCAAGCCAACGTCGTTACGTGGCATACTGGGAAAGTCTACTTTCTGTCCCTAGGGGAGCTGGATATGGACTACCAAACGTGAACATACCTCAACCATGTAGCAGAGAATTGCGGCGAATCCGGCTTTACGATACAGTCAACATTGACACAATATTCTTTGTTATCTCAGAGCTGCAGGAGATTCCTGATGAGGTCTATCGTCCACCGGTGGAAGCTTACCGAAGCTGCTGTAGACAGATAAAGAAAGGCTATCAGAGAACCAACAGTCCTCGCTACTATATCTCTATTCTTGAAGGTGATAAAGATGGAAACCAATCAGAAATAGAAGAACCTCGCGTTGTAGTTCAAATGGACACAGAGAGTCCTGCAATTTACCAAAAATCATGTTTGGACCATTATTTTGATAAACCTATACAAGTAACTGGAGATGTTCGTGTCATATTCTATGAGAAAATGATAGGAGGTCGTCTTTTCTATTGCTGTTTTAACACAGCTTTTATTAGAAACAGTTTACTACAGCTCACAATACAGGAGTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGCCCTGATTTTTGCCTAGAATTACTGTTTGGTCCTGCTAATACAGGATATTCATCATCAAGTGTATCCATTGGTGACCATACTAGTGATGATTCTTTATAA 1248 0.3982 MGLKFTKQGPPKVDSLSLHHHMINYLSKNFIRNLVSKQRRRMLIDGYDLDMSYITDRVLAMSFPAERMRAMYRNPLWQVKSVLDMRHTEHYKIYNLCIEESYDPAHFYGRVESYPFDDNHVPSLQMIKAFCESVDSWLSRDPKNIAVIHCMAGKGRTGLMVCSYLTYCGMSADDALQLYADRRTTNNEGVSIPSQRRYVAYWESLLSVPRGAGYGLPNVNIPQPCSRELRRIRLYDTVNIDTIFFVISELQEIPDEVYRPPVEAYRSCCRQIKKGYQRTNSPRYYISILEGDKDGNQSEIEEPRVVVQMDTESPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTIQELDKVGKKGRSICGPDFCLELLFGPANTGYSSSSVSIGDHTSDDSL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2497 415 CDD PTP_PTEN 50 205 IPR045101 GO:0016791
Apr4g2497 415 Pfam Tyrosine phosphatase family 133 182 IPR026893 GO:0004721
Apr4g2497 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 206 IPR029021 -
Apr4g2497 415 Pfam C2 domain of PTEN tumour-suppressor protein 317 392 IPR014020 -
Apr4g2497 415 ProSiteProfiles Phosphatase tensin-type domain profile. 40 209 IPR029023 -
Apr4g2497 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Apr4g2497 415 ProSiteProfiles C2 tensin-type domain profile. 240 395 IPR014020 -
Apr4g2497 415 SMART PTEN_C2_2 222 394 IPR014020 -
Apr4g2497 415 Gene3D Protein tyrosine phosphatase superfamily 26 208 IPR029021 -
Apr4g2497 415 PANTHER BNAC03G16750D PROTEIN 1 397 - -
Apr4g2497 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 397 - -
Apr4g2497 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Apr4g2497 415 Gene3D - 266 397 - -
Apr4g2497 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 302 394 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2497 Apr-Chr4 33867785 33872078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2497 1 399 Protein tyrosine phosphatase (PTP) family AT5G39400 67.822 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2497 K01110 - gmx:100809938 766.918