Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2488 ATGGGGTGTGTGAATTCGAAGAAAGCGGTTGCCGGAGGTGGGTCGCGTTCGTCGCCGGCGGCGCCATACGTGCAGTCTGGTTCGAGAAAGCGGGGCAATGGGTCGGGGCGAAACGACGTGGTGGAGGGAAAATGGAATGCAGTATCGAATTGTGGGGTTGTGGAGAGGGAGAGAAGACGAGAAGGGTTCCACACTGAGGAGTTGAGGAGTGGTTCTTTAAGGTTGTCTTCTCATAGGTTTGTTGAAGCTGAGCATAATGCTGCTGGTTGGCCACCTTGGCTTAGCTCTGTTGCTGGAGAAGCCATTCAAGGATGGCTCCCTCTTAAAACTGATTCTTTTGAGAAATTGCACAAGATTGGACAAGGTACATATAGCAGTGTGTTCCAAGCACGTGAAGTTGAAACTGGGAGAATGGTTGCCCTGAAAAAGGTGCGGTTTGACAAGTTTCAACCTGAAAGCATTAGGTTCATGGCAAGAGAAATAATAATTCTACGCACACTTGACCACCCAAACATCATGAAATTGGAGGGAATAATTACTTCACCACTATCAAATAGCATATATCTTGTATTTGAATACATGGAGCATGATCTTGCTGGTCTAGTATCTTCACCTGATGTCAAGTTCACTGACTCACAGATTAAGTGTTACATGAGACAGCTATTAAGTGGAATTGAGCATTGTCACGTTAGGGGTATTATGCATCGAGACATTAAAGTATCTAATATATTAGTGAACAATGAAGGTATTCTAAAGATAGGAGACTTTGGATTAGCAAATACCCTTAACCCAAATAGTAAGCACCCTTTAACAAGTCGTGTAGTGACTCTATGGTATCGTCCTCCTGAGCTCTTAATGGGATCAACAAATTATGGAGTTTCAGTGGATCTGTGGAGTGTAGGCTGTGTATTTGCTGAACTTTTACTGAGGAAGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAGAATTTTCAAGCTTTGTGGGTCTCCACCTGATGAGTACTGGAAAATGAGTAAGCTTCCTCTTGCCACAATGTTTAAGCCTCAGACTAATTACGAAAGCTCTCTTCGGGAGAGATGTAAAGGTTTTCCTGTAACTGCTGTAAACCTTCTTGAGACTTTGCTTTCCATTGATCACTCCAAGCGTGGGACTGCATCCTCTGCACTTATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGTTAAAGATCGGGAAGATATGCGCAGGAAAAAGAATGAAGGTAAAGTGCGAGAGGCTGCAACAATGAAAAGGCAAAGAAGAGTCCACAAAGTTTCACATGACCCTAACAATATCAACAAACCAGCTTTGAAAGAGAATATTTCTCAAAATGCTTGTACAGATGATGGTAAGACACGTATTACAAAGGGAAAAGTAGGAGCTATGCATAAAGAGCAACCAAAGGCTTCATATGATGCAAAGTCAGAGGCTGCCCAATTGATGAATGGTTCCAATGGATTCAGTGCATACTCAGGACCAGCACCAGTCTCAGGATCTAGTGGTTTTACGTGGGTGAAAAGGAAAAAACATGATTCATCCATATTATCAGATGGATCCAGAAGCAAAATCAGTGCACTGGATCCAGCCTTTGCAAAAGGCACATATGATTTAACAAAACATGGGATAGAAGTTTCAGAAAGAAATCATAATTATCAGGATGAGATTTCCAACCATCTATCACAAAAGCACCAGGCTCATCATGTTCAATCGTTTGATGCAGCTGATGCATGCCATTCAAACTATTACATGGAATTTGATCTCACAGATAAAACAGATTCTCTGATAGATACTCAGGGCTACAAAAAACTTGGTGAGCCTGTGGAACAATCAGTACCAAAAATAACCCAATTGAATAAAAATGATGAGTTGTTGCATCGGAATGAAAATAGTGTGCGGCAATCAGTTCATAAATCAAGGTTTGGAAGAGAAAAATGA 2010 0.4194 MGCVNSKKAVAGGGSRSSPAAPYVQSGSRKRGNGSGRNDVVEGKWNAVSNCGVVERERRREGFHTEELRSGSLRLSSHRFVEAEHNAAGWPPWLSSVAGEAIQGWLPLKTDSFEKLHKIGQGTYSSVFQAREVETGRMVALKKVRFDKFQPESIRFMAREIIILRTLDHPNIMKLEGIITSPLSNSIYLVFEYMEHDLAGLVSSPDVKFTDSQIKCYMRQLLSGIEHCHVRGIMHRDIKVSNILVNNEGILKIGDFGLANTLNPNSKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELLLRKPILKGRTEVEQLHRIFKLCGSPPDEYWKMSKLPLATMFKPQTNYESSLRERCKGFPVTAVNLLETLLSIDHSKRGTASSALMSEYFSTKPYACNPSLLPKYPPSKEMDVKDREDMRRKKNEGKVREAATMKRQRRVHKVSHDPNNINKPALKENISQNACTDDGKTRITKGKVGAMHKEQPKASYDAKSEAAQLMNGSNGFSAYSGPAPVSGSSGFTWVKRKKHDSSILSDGSRSKISALDPAFAKGTYDLTKHGIEVSERNHNYQDEISNHLSQKHQAHHVQSFDAADACHSNYYMEFDLTDKTDSLIDTQGYKKLGEPVEQSVPKITQLNKNDELLHRNENSVRQSVHKSRFGREK* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2488 669 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2488 669 MobiDBLite consensus disorder prediction 415 440 - -
Apr4g2488 669 MobiDBLite consensus disorder prediction 408 477 - -
Apr4g2488 669 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2488 669 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Apr4g2488 669 MobiDBLite consensus disorder prediction 458 475 - -
Apr4g2488 669 MobiDBLite consensus disorder prediction 1 41 - -
Apr4g2488 669 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Apr4g2488 669 Gene3D Transferase(Phosphotransferase) domain 1 196 437 - -
Apr4g2488 669 PANTHER CYCLIN-DEPENDENT KINASE 65 567 - -
Apr4g2488 669 PANTHER CELL DIVISION PROTEIN KINASE 65 567 - -
Apr4g2488 669 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2488 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Apr4g2488 669 MobiDBLite consensus disorder prediction 19 33 - -
Apr4g2488 669 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Apr4g2488 669 CDD STKc_CDK9_like 113 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2488 Apr-Chr4 33812769 33819134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2488 105 437 Core Cell Cycle Gene Families AT5G10270 47.278 9.15e-107 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr4g2488 Pkinase 2.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2488 - - gmx:100781059 999.964