Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2487 ATGGATGATCATTCCCCTCTTGAAGAAGCCCTTCTGAACGGTGATACTAGTGCAAGCAACAATTCTGATCCCAGTAAGACTAGAGGAAATGAAAATTTAACCCGCTATTCAAATGCTGGATTTTTCAGCATGCTTACTTTCTCATGGATGAATCCACTAATAAGTCTAGGCAATGAGAAGACTTTAGATCATGAGGACCTTCCATTGCTTGCCACCAACGACAGTGCCTATGGAACTTTTACAACTTTCAGAAACAATCTTGAGTCAGAGTGTGGTAGTGTTAGGAGAGTGACCACTCCCAAGCTGTTTAAAGTGTTAATCTTCTCAACATGGAAAGGTCTCCTTTTATCAGGTTTACTAGCATTCCTATGCAGCTGTGCTTCTTTTGTTGGACCCTATCTTATTGAAAACCTTGTTCAATACTTCAATGGGGTACACAAGTTAAGAAGTGATGGCTATATGTTGGCTATTGCATTTGTTGCTGCAAAGCTTGTTGAGTGTATTTCACAGAGGCACTGGATGTTTAGGTTGCAGCAGACTGGGGTTAGGATGCAGTCAATGTTGGTGGAAATGATATATGCTAAAGGTTTGACCCTTTCACGTCAATCAAAGGAAGGTCACAGCAGTGGGAAAATCATCAACTTAATGACTGTTGATGCTGGAAGGGTCGGATCACTTTGTTGGTACCTGCATGTTCCATGGTTATGTGTTCTGCAAGTAGCTTTGGCCTTGTTAATTCTCTATAGAAATGTAGGGATTGCTTCAATAGCTTCTTTTGCTGCCACTGTGATTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAAAAGTACCAACTTAAATTAATGGAGCTAAAAGATAAAAGAATGAAGGTGACATCTGAGATTCTAAAGAATATGAAGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTTTTCAGCTTAGGAAGACTGAGGAGACATGGCTAAAGAAATTTCTAGTTAGCTTGGTTATTATTAGATTTCTCTTGTTTAATGCCCCAACTTTTATTGCTGTGGTCACTTTTGGTGCTTGTGCTCTTATAGGCATCCCACTTGAATCAGGGAAGATCTTATCTGCACTTGCAACATTTGAAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCTCTTGATAGGATTACATCATTTCTTTGTCTAGATGACTTGCAGACTGATGTAGTAGAGAAACTTCCACAGGGTAGTTCTGATATAGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCACTTAATAGTAATACTACATTGAAAGACATAAATCTCACAGTTTTTCATGGTATGAGGGTTGCTGTATGTGGTACTGTTGGATCGGGCAAGTCTAGTTTACTTTCTTGTATAATAGGGGAAGTACCTAAGATATCTGGGACCTTGAAGGTATGTGGATCAAAGGCTTATGTTTCTCAATCACCATGGATACAAAGCGGCAAGATAGAAGAGAACATATTATTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACGAAAGACCTTGAGATTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATTGCCCGTGCCCTTTACCAAGATGCTGATATATATTTGTTTGACGATCCTTTCAGTGCTGTGGATGCTCATACAGGATCCCATCTCTTCAAGGAATGTTTACTTGGCCTTTTAAAAACAAAAACTGTGATATACATAACTCATCAAGTAGAGTTCTTACCTGATGCTGATTTAATATTGGTCATGAGAGAAGGAAGCATAACTCAATCAGGAAAATACAATGACATTCTCAGGTCAGGCACAGATTTTATGGAACTTGTAGGTGCACATAGAGAAGCTTTATCTTCTATTGAGTCCCTAGAGAGAAGGCATACACTTAAAACACTGGGTATCACCACAGAGGACACAGATTCACCAAATGATTTTGAACTTGAGCAAAAAATGAAAAACATAGATGATCAAAATGAAAAGTCTGATGACACAGTTGAGCCAAAAGGCCAACTAGTTCAAGAAGAAGAACGGGAAAAAGGCAAAGTTGGGTTTAAGGTCTACTGGAAATACATTACAATAGCTTATGGAGGAGCTCTTGTACCCTTCATACTACTCTCACAGACACTCACAGTTGTTTTTCAGATTGGAAGCGATTATTGGATGGCTTTAGCAACTCCAGTTTCAGCAACTGCAGAAATTGCTATTGGAATCTTCACACTTATGATTGTCTATGTCGCTTTGGCAATTGGAAGTTCCTTTTTCATCCTATCCAGAGCAGTTCTTTCTATGATAGCTGGATACAAGACAGCCACTATGCTCTTCAATAAAATGCATTTGTGTCTTTTTCAAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGGAGAATCCTTAATAGAGCTTCAGCAGACCAAAGTTCAATAGATTTGAGCATTCCAAATGTAGTATGGGCAATTACCATGAGCATGATTCAGCTCTTGGGGAATATTGTTGTGATGTCTCAAGCTGCATGGCAGGTGTTCATAGTATTGATTCCTATTATGGCAGCTTGCCTATGGTACCAGCGATACTACTCAGCATCTGCACAAGAATTGGCACGATTAGTTGGTGTATGCCAAGCTCCAGTTATACAACACTTCTCTGAAACTATTTCTGGATCGACAACCATAAGATGTTTTGAGCAAGAATCAAGATTTAATGACATAAATATGAAGTTGATAGACAGATATACTCAACCCAGATTATACAGTGCAAGTGCAATGGAATGGCTGAGTTTGAGATTGGATATTTTATCCACTATCACATTTGCCTTCAGTTTGGTGTTCCTGATATCTTTTCCAAATTCAATTACTGCTCCTGGCATTGCTGGATTGGCTGTGACATATGGGCTTAGTCTAAATGAACAACAATCTAGTTTAATCTGGTTTCTTTGCAATTTGGAGAACCAAATTATATCCGTAGAAAGAATACTTCAGTACACCTCCCTCCCAAGTGAAGCTCCTCTTGTAATAAAAGACAGCCAACCAGATCATTCTTGGCCATCATCTGGAGAGGTTCACATTCAAAATTTACAGGTTCAATATGCTCCTCACTTGCCTCTTGTTCTACATGGTCTTACTTGCACTTTTGCTGCTGGAGCAAAAACTGGCATTGTGGGAAGGACAGGAAGTGGAAAATCAACTCTAGTGCTAACACTTTTTCGACTTCTTGAACCTGTTGCTGGACAAATATTGATAGATAGTGTTAACATCTCTTCGATTGGAATTCATGATTTGAGATCCAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGAACTGTAAGAAGCAACCTGGACCCCCTGGAAGAGTACACAGATGAACAGATTTGGGAGGCCCTAGATATGTGCCAACTAGGAGATGAAGTAAGGAAGAAAGAGTGGAAGCTTGACTCTACAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAGTTGGTCTGCCTTGGCCGTGTTCTACTTAAGAAAAGCAAGATATTGGTGCTTGATGAAGCTACTGCCTCAGTTGATACAGCCACAGATAATATTATACAGCAAACAGTGAAACAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTTGATAGTGACATGGTTCTGTTTCTAAATCAAGGACTTATTGAGGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCTTCTCTTGCTCAACTAGTTGCAGAATATACAAGGAGGTCAAACTCTGGTTTTGGAAGTTAA 3924 0.3917 MDDHSPLEEALLNGDTSASNNSDPSKTRGNENLTRYSNAGFFSMLTFSWMNPLISLGNEKTLDHEDLPLLATNDSAYGTFTTFRNNLESECGSVRRVTTPKLFKVLIFSTWKGLLLSGLLAFLCSCASFVGPYLIENLVQYFNGVHKLRSDGYMLAIAFVAAKLVECISQRHWMFRLQQTGVRMQSMLVEMIYAKGLTLSRQSKEGHSSGKIINLMTVDAGRVGSLCWYLHVPWLCVLQVALALLILYRNVGIASIASFAATVIVMLLNLPVASLQEKYQLKLMELKDKRMKVTSEILKNMKILKLQAWEMKFLSKIFQLRKTEETWLKKFLVSLVIIRFLLFNAPTFIAVVTFGACALIGIPLESGKILSALATFEILQMPIYSLPDTISMIAQTKVSLDRITSFLCLDDLQTDVVEKLPQGSSDIAIELVDGNFSWDLSSLNSNTTLKDINLTVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKVCGSKAYVSQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLTKDLEILPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMREGSITQSGKYNDILRSGTDFMELVGAHREALSSIESLERRHTLKTLGITTEDTDSPNDFELEQKMKNIDDQNEKSDDTVEPKGQLVQEEEREKGKVGFKVYWKYITIAYGGALVPFILLSQTLTVVFQIGSDYWMALATPVSATAEIAIGIFTLMIVYVALAIGSSFFILSRAVLSMIAGYKTATMLFNKMHLCLFQAPMSFFDATPSGRILNRASADQSSIDLSIPNVVWAITMSMIQLLGNIVVMSQAAWQVFIVLIPIMAACLWYQRYYSASAQELARLVGVCQAPVIQHFSETISGSTTIRCFEQESRFNDINMKLIDRYTQPRLYSASAMEWLSLRLDILSTITFAFSLVFLISFPNSITAPGIAGLAVTYGLSLNEQQSSLIWFLCNLENQIISVERILQYTSLPSEAPLVIKDSQPDHSWPSSGEVHIQNLQVQYAPHLPLVLHGLTCTFAAGAKTGIVGRTGSGKSTLVLTLFRLLEPVAGQILIDSVNISSIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEWKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSILDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGS* 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2487 1307 SUPERFAMILY ABC transporter transmembrane region 742 1043 IPR036640 GO:0005524|GO:0016021
Apr4g2487 1307 CDD ABC_6TM_ABCC_D1 125 403 IPR044746 GO:0140359
Apr4g2487 1307 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g2487 1307 Gene3D ABC transporter type 1, transmembrane domain 705 1042 IPR036640 GO:0005524|GO:0016021
Apr4g2487 1307 Gene3D ABC transporter type 1, transmembrane domain 88 409 IPR036640 GO:0005524|GO:0016021
Apr4g2487 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 653 IPR027417 -
Apr4g2487 1307 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 6 1306 - -
Apr4g2487 1307 Gene3D - 1044 1297 IPR027417 -
Apr4g2487 1307 MobiDBLite consensus disorder prediction 11 32 - -
Apr4g2487 1307 Pfam ABC transporter 449 583 IPR003439 GO:0005524
Apr4g2487 1307 Pfam ABC transporter 1078 1226 IPR003439 GO:0005524
Apr4g2487 1307 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 6 1306 - -
Apr4g2487 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1052 1287 IPR027417 -
Apr4g2487 1307 CDD ABCC_MRP_domain2 1059 1279 - -
Apr4g2487 1307 Gene3D - 410 674 IPR027417 -
Apr4g2487 1307 ProSitePatterns ABC transporters family signature. 556 570 IPR017871 GO:0005524
Apr4g2487 1307 Coils Coil 276 296 - -
Apr4g2487 1307 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1061 1295 IPR003439 GO:0005524
Apr4g2487 1307 CDD ABC_6TM_ABCC_D2 742 1036 IPR044726 GO:0140359
Apr4g2487 1307 SUPERFAMILY ABC transporter transmembrane region 101 403 IPR036640 GO:0005524|GO:0016021
Apr4g2487 1307 Pfam ABC transporter transmembrane region 745 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g2487 1307 Pfam ABC transporter transmembrane region 114 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g2487 1307 SMART AAA_5 458 631 IPR003593 -
Apr4g2487 1307 SMART AAA_5 1087 1272 IPR003593 -
Apr4g2487 1307 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 654 IPR003439 GO:0005524
Apr4g2487 1307 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 744 1024 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr4g2487 1307 MobiDBLite consensus disorder prediction 12 32 - -
Apr4g2487 1307 CDD ABCC_MRP_domain1 429 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2487 Apr-Chr4 33804809 33811661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2487 429 668 Calmodulin-binding Proteins AT2G36910 30.000 8.49e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2487 - K05666 gmx:100795627 2192.93