Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2484 ATGCTTATTTTGATGTTTGCATTTGTTTATGCATCTAGATATACTTTCATGTGCCTGATTATATATTTTATCTCTTCCATAATTTTACTTCTAGATTTAAAAATGGATGGATCAGCTGGCCGAGGTGTTGGTGCTGGCCTGGACATGTTTCTACCCAATTATAAATTGGGAAAAACACTTGGAATTGGATCCTTTGGGAAGGTGAAAATTGCAGAGCATGTATTGACTGGCCATAAGGTTGCAATCAAGATCCTTAACCGTCGAAAGATAAAGAACATGGACATGGAAGAAAAAGTGAGAAGAGAAATAAAAATTTTAAGATTGTTCATGCATCCTCACATTATACGCCTTTATGAGGTCATAGAAACTCCAACTGACATATATGTTGTTATGGAGTATGTGAAATCGGGAGAGTTATTTGATTACATAGTGGAGAAGGGTAGACTGCAGGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGGGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCCAACTATGCAGCTCCTGAGGTTATCTCTGGGAAATTGTACGCTGGACCAGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTGTATGCACTTCTTTGTGGCACTCTGCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGTGGGATATATACACTTCCCAGTCATCTGTCACCTGGTGCTAGAAATTTGATACCAAGGATGCTTGTGGTCGACCCTATGAAGAGGATAACTATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGTCTTCCACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAATATGGGATTTGACAAGAATCAATTGGTTGAATCTCTTCGGAACAGGATACAAAACGAGGGTACTGTAGCCTACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGCGGCTATCTTGGAGCTGAGTTTCAAGAGTCCATGTCTCGTGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGTCACTACAACATGAAGTGCAGGTGGGTTGCTGGCATTCCTGGTCAACATGAAGGAATGGTGAACAATGCTGTGCATAATAATCATTACTTTGGAGATGATTCCAACATTATTGAGAATGATGCCGTTTCTGCTTCAAATGTTGTCAAATTTGAGGTGCAGCTTTACAAAACTAGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAAGGTCCACAGTTTCTCTTCTTGGATCTGTGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTAG 1509 0.4076 MLILMFAFVYASRYTFMCLIIYFISSIILLLDLKMDGSAGRGVGAGLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARNLIPRMLVVDPMKRITIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDKNQLVESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQESMSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGIPGQHEGMVNNAVHNNHYFGDDSNIIENDAVSASNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2484 502 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 453 501 IPR001772 -
Apr4g2484 502 Pfam Kinase associated domain 1 459 501 IPR001772 -
Apr4g2484 502 CDD AMPKA_C 386 499 - -
Apr4g2484 502 SUPERFAMILY Protein kinase-like (PK-like) 51 322 IPR011009 -
Apr4g2484 502 SMART serkin_6 54 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2484 502 Gene3D Transferase(Phosphotransferase) domain 1 46 387 - -
Apr4g2484 502 SUPERFAMILY UBA-like 316 365 IPR009060 GO:0005515
Apr4g2484 502 Pfam UBA/TS-N domain 328 364 IPR015940 -
Apr4g2484 502 SMART uba_6 329 366 IPR015940 -
Apr4g2484 502 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 387 501 - -
Apr4g2484 502 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 43 332 - -
Apr4g2484 502 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 327 367 IPR015940 -
Apr4g2484 502 ProSiteProfiles Protein kinase domain profile. 54 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2484 502 PANTHER SERINE/THREONINE KINASE 43 332 - -
Apr4g2484 502 PANTHER SERINE/THREONINE KINASE 387 501 - -
Apr4g2484 502 Pfam Protein kinase domain 54 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2484 502 CDD STKc_AMPK_alpha 51 306 - -
Apr4g2484 502 CDD UBA_SnRK1_plant 328 368 - -
Apr4g2484 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Apr4g2484 502 Gene3D Kinase associated domain 1, KA1 388 500 - -
Apr4g2484 502 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Apr4g2484 502 SUPERFAMILY KA1-like 363 501 IPR028375 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2484 Apr-Chr4 33782655 33790995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2484 54 306 CBL-interacting serine-threonine protein kinases AT4G24400 53.150 2.53e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Apr4g2484 Pkinase 2.7e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2484 K07198 - gmx:100796687 889.026