Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2483 ATGGGAAGGAAGAGAAAGGTTGCTGCAGAAGTTAGAGAGAGGAATCCATCTGAGGAAAACTTGGCATGGAATGAGGTGATGAAGGAACCTGCTACACCTGGAAGTGCCAAAAGATCCAGAAAAAGATTTGTTGGGGTGAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAGAAGATAAGGGTGTGGTTAGGCACTTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTTCATGCTTCGTGGTGCCAACACTAGAACAAACTTTTGGCCTTGTTCTCAACCTTCATCAACTCCTGCTCTTCCCTCAAAGATTACAAATCTCCTCCTTCAAAGGCTTAAAGCAAGGAATAATGGCAATAATAATAATAATAACAATCCTTGCTCTTTTTCTGCTTCTTCAACTTCCTCCTCAAATTCTTTTTCTTTCAACAACCAACAAAAGCAACAAGTAGATGTTTATGGAACTGAACCAAAATCTTTCTCAATGGACCAATTCACTGATTTCCTTAATGACCCTGAAGATTATGGCACAAGCAACAACGAATTCAGTGATAATAGTGCACAAATTGACTACATCACAAATAGTTTTGAATCATGTTTAGCTGGAAAAGATGATTGTAGGGAAAAAGAAATGGGTATGGAATGCAATTTCAGCAGTGTGGCACAAACAACATCAAATGCTGATTGCAGTTCAGGAGGGGAAAGAGAGGGAGACAATGAAGAAGGCATTTGTTTGAGTGCCAAGGATTTTCAGTTCTTGGACAATGTTGTTCCATCTAATTACTATTATTCTCCTTTTGAGATTGCTGAAGAAATTGAGGAACCTTTGGAACCAGAGAACTATAGTGATGAGCCTTCAATGTTAAGAGCTGTCATGAAGAGAATGAAATATGAGAGAAAGTTCTCAGCTTCCCTTTATGCCTTCAATGGAATAACTGAGTGCTTGAAGTTGAAACTGGAATCGGGAAACAAAAATGGAAGAGGGGCTTCTAGTCAACTAACCAGCCTCAAGATGGCTTGTAGCAAAAACAAGATTGAGGCTAATAAGAAGAATGAAGAGTACATGGGAGCAATGGATAGGAAAGACGAAGAAAAACCACAAACATCAATTGGCATGGATTGCTCCTCCCCCACTTTTGCATCCAGTATTGATGGGGAACTCTTACTTTGGAATTCACTTGATCTTCCTAGTATTTGCTTTGTTAACTAG 1239 0.3987 MGRKRKVAAEVRERNPSEENLAWNEVMKEPATPGSAKRSRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAAFMLRGANTRTNFWPCSQPSSTPALPSKITNLLLQRLKARNNGNNNNNNNPCSFSASSTSSSNSFSFNNQQKQQVDVYGTEPKSFSMDQFTDFLNDPEDYGTSNNEFSDNSAQIDYITNSFESCLAGKDDCREKEMGMECNFSSVAQTTSNADCSSGGEREGDNEEGICLSAKDFQFLDNVVPSNYYYSPFEIAEEIEEPLEPENYSDEPSMLRAVMKRMKYERKFSASLYAFNGITECLKLKLESGNKNGRGASSQLTSLKMACSKNKIEANKKNEEYMGAMDRKDEEKPQTSIGMDCSSPTFASSIDGELLLWNSLDLPSICFVN* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2483 412 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 350 - -
Apr4g2483 412 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Apr4g2483 412 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Apr4g2483 412 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Apr4g2483 412 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Apr4g2483 412 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Apr4g2483 412 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Apr4g2483 412 MobiDBLite consensus disorder prediction 21 42 - -
Apr4g2483 412 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Apr4g2483 412 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Apr4g2483 412 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2483 Apr-Chr4 33779782 33781195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2483 36 118 AP2-EREBP Transcription Factor Family AT5G19790 67.470 1.18e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g2483 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2483 K09286 - gmx:100796159 572.007