Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2477 ATGGAAGGAGCATCAGGTGTGAGAAAAGGCGCATGGAGCAAAATTGAAGACGACCTTCTCAAAGCTTGCATTCACCTTTATGGGGAGGGAAAGTGGCACCTTGTTCCTCAAAGAGCAGGGTTGAATAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAATTATCTTAAACCAAATATCAAGCGGGGAGATTTTAGTGAAGACGAGATTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCGTTGATTGCTGGAAGACTTCCTGGAAGAACACCAAACGATGTGAAAAACTATTGGAACACCTACATGCGCCGTAAAATAGAGTCTCAGAAGAAAGACAATAACATAAACCAGCAAGATGTCAAATTAACAGTGACACCCCATGAAGTTATAAAGCCTGTACCTCGAACTTTCTCAAAAAAATACTCTCCTTCTTCTCAAGGGAGATTCATTGCCTCAAATGAAAATGGTTCCATAGTTGGTGTTAGTGCAGCATGTGCAGATTCATCAGGACCCACGAATTGGTGGGAAACTTTGCTAGAAGACAAAGGTGATAGTGTAGATACGACGGATCTCTGGGATGAAGAGCTTGCTTCGGCAACAACAGCTTGCGACTTTCTTTCTGAAGTTAATTATAATTGGAGTAATTTTCTTCTTGAGGTGGATTTGTTGGATACTGTAATCTTAAACGTTAATTAG 711 0.4079 MEGASGVRKGAWSKIEDDLLKACIHLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEIDLMIRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTYMRRKIESQKKDNNINQQDVKLTVTPHEVIKPVPRTFSKKYSPSSQGRFIASNENGSIVGVSAACADSSGPTNWWETLLEDKGDSVDTTDLWDEELASATTACDFLSEVNYNWSNFLLEVDLLDTVILNVN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2477 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Apr4g2477 236 Gene3D - 9 61 - -
Apr4g2477 236 Gene3D - 64 132 - -
Apr4g2477 236 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Apr4g2477 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Apr4g2477 236 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Apr4g2477 236 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Apr4g2477 236 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 147 - -
Apr4g2477 236 CDD SANT 11 56 IPR001005 -
Apr4g2477 236 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Apr4g2477 236 CDD SANT 65 107 IPR001005 -
Apr4g2477 236 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Apr4g2477 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 147 - -
Apr4g2477 236 SMART sant 61 109 IPR001005 -
Apr4g2477 236 SMART sant 8 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2477 Apr-Chr4 33731719 33732952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2477 2 147 MYB Transcription Factor Family AT1G66370 60.265 5.04e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g2477 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2477 - K09422 gmx:100781091 312.768