Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2476 ATGGAAGGAGCATCAGGTGTGAGAAAAGGCGCATGGAGCAAAATGGAAGATGACCTTCTTAAAGCTTGCATTCAGCTTTATGGGGAGGGAAAGTGGCACCTTGTTCCTCAAAGAGCAGGGTTGAATAGATGCCGCAAGAGTTGTAGACTGAGATGGTTGAACTATCTCAAACCAAATATCAAGCGGGGAGATTTTAGTGAAGACGAGATTGATTTGATGATCAAATTGCATAAGCTTTTGGGAAACAGATGGTCGTTGATTGCTGGAAGACTTCCAGGAAGAACTCCAAACGATGTGAAAAACTATTGGAACACTTACATGCGCCGGAAAATAGAGTCTCAGAAGAAAGACAATAACATAAAGCAGCAAGAAGCCATATTAACAGTGACACCCCATGAAGTGATAAAGCCTGTACCTCGAACTTTCTCTAAAAATGACTCTCCTTCTTTGCAAGGGAGATTTATTGCCTCCAATGAAAGTGGTTCCAAAGTTGGTGTTAGTGAAGCATGTGCAGCTTCATCAGGATCCGGAAATTGGTGGGAAACTTTGCTAGAAGACAAAGGTGGCAGTGTAGATATGACAGATCTTTGGGATGAAGAGCTTGCTTCAATAACAACAGCTTGTGATTTTCTTACCGAAGGTAATAATAATTGGAGTGATTTTCTTCTTGACGAGGATTTGTTGGATACTCAAATCTTGAACGTTAATGTAGGAGATTATTAG 723 0.4094 MEGASGVRKGAWSKMEDDLLKACIQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEIDLMIKLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTYMRRKIESQKKDNNIKQQEAILTVTPHEVIKPVPRTFSKNDSPSLQGRFIASNESGSKVGVSEACAASSGSGNWWETLLEDKGGSVDMTDLWDEELASITTACDFLTEGNNNWSDFLLDEDLLDTQILNVNVGDY* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2476 240 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 146 - -
Apr4g2476 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Apr4g2476 240 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 146 - -
Apr4g2476 240 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Apr4g2476 240 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Apr4g2476 240 Gene3D - 63 128 - -
Apr4g2476 240 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Apr4g2476 240 SMART sant 61 109 IPR001005 -
Apr4g2476 240 SMART sant 8 58 IPR001005 -
Apr4g2476 240 CDD SANT 11 56 IPR001005 -
Apr4g2476 240 Gene3D - 9 61 - -
Apr4g2476 240 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Apr4g2476 240 CDD SANT 65 107 IPR001005 -
Apr4g2476 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Apr4g2476 240 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2476 Apr-Chr4 33708356 33709508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2476 2 147 MYB Transcription Factor Family AT1G66370 59.355 1.87e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g2476 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2476 - K16166 gmx:100781091 334.724