Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2473 ATGGGGCGATCACCATGCTGTGACAAGGTGGGTTTAAAGAAAGGACCATGGACACCAGAGGAAGATCAGAAGCTCTTGGCTTATATTGAAGAACATGGTCATGGAAGCTGGCGTGCTTTGCCAACTAAAGCTGGGCTTCAGAGGTGTGGCAAGAGTTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCCACGCATTTGCCAAAGAGAACAGATAATGAGATAAAGAACTACTGGAACACACATCTTAAGAAAAGGTTAACCAAAATGGGCATTGACCCAGTGACCCACAAGCCCAAGAACGATGCCCTCCTCTCTAGTGAGGGTCATTCCAAGAGTGCTGCAAACCTAAGCCACATGGCTCAGTGGGAGAGTGCTAGGCTCGAAGCTGAAGCAAGATTGGTTAGGGAATCAAAACTACGTTCACATAACTCACTTCAGCACCACCTTGGAACTTGTGGTTTTCCACCACCACCATCATCTTCTTCATCATCTGCATCATCATCATCTTCTTCAGCTCCAGTGATACCCTCATCATCATCATCACGTTCTCTTGTTGCAACAACTAGGATCAATGCTAGTGGTGACCTTGACCTTGAGTCTCCTACTTCTACCTTATCTTTTTCTGAGAACAATGCACCACCAATTATGACAAGTATGATAGAGTTTGTGGGTTTTTCTTCAGAGAGAGGGACAGTGAAAGAAGAAGGTGAACAAGAGTGGAAAGGTTACGAAAGTGCGACCCATTTGGCAGAATACAAAGATGGCATGGAGAATTCAATGCCTTTTACGTCTAATCTTCATGAACTCATGACAATGACCATGGAAACCACGTGGGGTTCAGCAACTGAGTCTCTTAGGACCAGTGCAAGTGGTGCACATGCACCTGTTGCTGAGGAGGGTTTCACCAACCTTTTGCTTAATAATGATTCCGATGACCGGAGCTTGTCGCCGGACGGTGCTGAAGAGTCCAATAAATGTCATGGAAGTGGCAGTGGCAGTGAGTTCTATGAAGATAGCAAGAACTATTGGAATAGCATCTTTAATTTGGTGAATTATTCTCCCTCTTCTGATTCACCCATGTTTTGA 1176 0.4481 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSEGHSKSAANLSHMAQWESARLEAEARLVRESKLRSHNSLQHHLGTCGFPPPPSSSSSSASSSSSSAPVIPSSSSSRSLVATTRINASGDLDLESPTSTLSFSENNAPPIMTSMIEFVGFSSERGTVKEEGEQEWKGYESATHLAEYKDGMENSMPFTSNLHELMTMTMETTWGSATESLRTSASGAHAPVAEEGFTNLLLNNDSDDRSLSPDGAEESNKCHGSGSGSEFYEDSKNYWNSIFNLVNYSPSSDSPMF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2473 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr4g2473 391 CDD SANT 69 112 IPR001005 -
Apr4g2473 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr4g2473 391 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr4g2473 391 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr4g2473 391 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr4g2473 391 Gene3D - 13 66 - -
Apr4g2473 391 CDD SANT 16 61 IPR001005 -
Apr4g2473 391 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 386 - -
Apr4g2473 391 MobiDBLite consensus disorder prediction 122 147 - -
Apr4g2473 391 MobiDBLite consensus disorder prediction 337 364 - -
Apr4g2473 391 SMART sant 13 63 IPR001005 -
Apr4g2473 391 SMART sant 66 114 IPR001005 -
Apr4g2473 391 MobiDBLite consensus disorder prediction 172 214 - -
Apr4g2473 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 386 - -
Apr4g2473 391 Gene3D - 69 116 - -
Apr4g2473 391 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr4g2473 391 MobiDBLite consensus disorder prediction 185 214 - -
Apr4g2473 391 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2473 Apr-Chr4 33663634 33666313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2473 329 391 MYB Transcription Factor Family AT3G01140 52.381 2.43e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g2473 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2473 K09422 - gmx:100794047 526.939