Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2472 ATGGGATCAATGGAGAACGTTTCCAAAGCAAGGAAAGAAGATCAGAAGTTTGAATTGCCACCGGGTTTTCGATTTCATCCAACAGATGAAGAACTCATAAACCAGTACCTTACAAAGAAGGTTGTTGATAGCTGTTTCTGTGCTATAGCTATTGGTGAGGTTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGGCTGGCTAAAATGGGTGAAACAGAATGGTATTACTTTTGCGTGAGGGACAGAAAATACCCAACTGGTTTAAGGACTAATAGGGCCACTCATGCTGGTTATTGGAAGGCCACAGGTAAAGACAAGGAGATAATCATGGAAAATGCACTCATTGGGATGAAGAAAACCCTTGTTTTCTACAAGGGTAGAGCTCCAAAAGGTGAAAAGACAAATTGGGTTATGCATGAATATAGGTTGGAAGGGAAACATTCTGAACATGATCTACCCAAACCTGGCAAGAGTGAATGGGTTATTTGTAGAGTCTTTGAGAAGAGTCCTTGTGGGAAGAAAATGCATGTTCCAAAGTTTGGGAGGGTCAACTCCTTTGGAGAGGAACAATCGTCTTTATTACCTCCATTGATGGATTCTCCTCCACCCAATAGTGAAACAAGAACCACTGGTGGTGAGTTGTCTCAGGTTACCTCCTTCTCCGATCCAAATCAAACTGAGAATCAGACCACACAAGATGACATTGTTGATAGCATGGAAAGTCCTACTCCTAACTTCAGCCTTTCATCTTCTTCAAGACCTTATGAAGTTTCCCCTATTGCCAATTCAACCCCTCAAGTCTCAAACCAATCAACACAATTTGCACACCAAATTGGTAATTCACAGTACCCAGACAGTTATTATCTGCCTCAAGAACAGTCCATGTTGAGGGCTCTGATGGAAAACCATGGTTCAAGTGCAAAGCAAATTCAAAAAGAAGAGTTTTCACAGGGAAGAAACTTTGATGCTGATATCTCCTCTGTGATTTACAGCAATGACATGTTACACAGGTTGTTTGGGAATCAACAACATTCATCAGCTTCTGCAGGGCCTGTGGACACTGATTGCCTATGGAATTACTGA 1086 0.419 MGSMENVSKARKEDQKFELPPGFRFHPTDEELINQYLTKKVVDSCFCAIAIGEVDLNKCEPWDLPGLAKMGETEWYYFCVRDRKYPTGLRTNRATHAGYWKATGKDKEIIMENALIGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKHSEHDLPKPGKSEWVICRVFEKSPCGKKMHVPKFGRVNSFGEEQSSLLPPLMDSPPPNSETRTTGGELSQVTSFSDPNQTENQTTQDDIVDSMESPTPNFSLSSSSRPYEVSPIANSTPQVSNQSTQFAHQIGNSQYPDSYYLPQEQSMLRALMENHGSSAKQIQKEEFSQGRNFDADISSVIYSNDMLHRLFGNQQHSSASAGPVDTDCLWNY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2472 361 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Apr4g2472 361 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Apr4g2472 361 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 6 358 - -
Apr4g2472 361 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
Apr4g2472 361 MobiDBLite consensus disorder prediction 204 273 - -
Apr4g2472 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 358 - -
Apr4g2472 361 MobiDBLite consensus disorder prediction 192 273 - -
Apr4g2472 361 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2472 Apr-Chr4 33650788 33652444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2472 18 361 NAC Transcription Factor Family AT5G07680 53.043 9.86e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr4g2472 NAM 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2472 - - gmx:100782172 568.926