Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2467 ATGGATCTTTTTGGATTGCTTGTTGGATTTTTCTACATGGTCTCACATGTGAATGGGTATGGTTATGGGGGGTGGACTAATGCTCATGCTACTTTCTATGGTGGAAGTGATGCCTCTGGGACAATGGGTGGGGCTTGCGGTTATGGAAACTTGTATAGCCAAGGTTATGGAACTGATACAGCAGCACTGAGCACTGCATTGTTCAACAATGGCTTGAGTTGTGGTGCATGTTTTGAAATTAAGTGTGTGAATGACCCACAGTGGTGCCTTCCTGGCTCCATTGTAGTCACAGCCACCAACTTTTGCCCCCCTGGTGGTTGGTGTGACCCTCCCCAACACCATTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATACAAGGCTGGGATTGTACCTGTAGTTTACAGAAGGGTGAGATGTAGGAGAAAAGGTGGAATTAGGTTCACCATCAATGGCCATTCTTACTTCAATTTAGTCCTTGTCACTAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAATTGGGGGCAAAACTGGCAGAGCAACTCATACCTTAATGGACAGAGTCTTTCATTTATAGTGACCACAAGTAATGGACACAGTTTGGTCTCGTACAATGTTGCTCCACCTAGTTGGTCCTTTGGGCAGACCTACACTGGAAGGCAGTTCAACTACTAA 726 0.4573 MDLFGLLVGFFYMVSHVNGYGYGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPQHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFIVTTSNGHSLVSYNVAPPSWSFGQTYTGRQFNY* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2467 241 Gene3D - 147 239 IPR036749 -
Apr4g2467 241 PANTHER EXPANSIN-A15 5 240 IPR002963 GO:0009664
Apr4g2467 241 PANTHER EXPANSIN 5 240 - -
Apr4g2467 241 SUPERFAMILY PHL pollen allergen 144 236 IPR036749 -
Apr4g2467 241 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Apr4g2467 241 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Apr4g2467 241 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Apr4g2467 241 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Apr4g2467 241 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Apr4g2467 241 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Apr4g2467 241 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Apr4g2467 241 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Apr4g2467 241 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
Apr4g2467 241 SMART dpbb_1 60 137 IPR007112 -
Apr4g2467 241 Pfam Lytic transglycolase 60 137 IPR009009 -
Apr4g2467 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Apr4g2467 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Apr4g2467 241 SUPERFAMILY Barwin-like endoglucanases 24 165 IPR036908 -
Apr4g2467 241 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Apr4g2467 241 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Apr4g2467 241 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Apr4g2467 241 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Apr4g2467 241 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Apr4g2467 241 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Apr4g2467 241 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Apr4g2467 241 Gene3D - 14 143 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2467 Apr-Chr4 33602887 33604016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2467 1 239 Expansin Gene Family AT2G03090 78.226 2.30e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2467 K20628 - gmx:100791784 477.633