Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2449 ATGGAGGGGACCAACCAAAATATATGCAGCTACGTCGCTGACACGATTGAACTGCAAATTCCCAGCACTCCCGAGTCATCATCCCCTTCTCTTTCTTTCACAAGACTTGCAGAGAGTTACCCTCCTGGCTTTACTAGAAAGGTATTTGCAGAGGTTATAGGCACATTCCTATTGGTGTTTGTGGGAAGTGGTACTGCTGGTCTTAGTGCTATTGATGAAAACAAAGTCTCAAAACTTGCAGCTTCACTTGCAGGAGGATTCATAGTGACGGTGATGATTTATTCTATTGGACACATCTCAGGGGCACACATGAATCCAGCGGTTTCTCTTGCTTTTGCCTCCGTCAAGCATTTGCCTTGGCCACAGGTCCCATTTTACGTTGCAGCTCAACTCACAGGAGCCATTTCTGCTTCATATACGCTGAGAGAGCTTTTTCAGCCATCTAAGCAAATTGGAGCAACGACATCCGCTGGATCCCACCTTCAAGCACTAATCATGGAAATGGTGACCACATTTACAATGGTGTTCATCTCCATGGCCGTGGCCACTGACCCAAAAGCTACAGGACAGCTTTCAGGAGTAGCGGTAGGTTCTTCGGTTAGCATAGCAAGCATTATCGCCGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAAGTTCAAACTACAAGGGACTTTGGGTCTATTTTGTTGGACCAGTTACTGGGGCACTTTTAGCAGCATGGTCTTACGGTGTGATTAAGGAGACAGATCAACCAAGTGCATTTTCACTATCCTCCTTTTCATTCAAGCAGCGTCAGAGCAATATTAGAACTGACCAAGTTGGTAAATCCACCCACCGATGCTTGGTGTGA 876 0.4635 MEGTNQNICSYVADTIELQIPSTPESSSPSLSFTRLAESYPPGFTRKVFAEVIGTFLLVFVGSGTAGLSAIDENKVSKLAASLAGGFIVTVMIYSIGHISGAHMNPAVSLAFASVKHLPWPQVPFYVAAQLTGAISASYTLRELFQPSKQIGATTSAGSHLQALIMEMVTTFTMVFISMAVATDPKATGQLSGVAVGSSVSIASIIAGPISGGSMNPARTLGPAIASSNYKGLWVYFVGPVTGALLAAWSYGVIKETDQPSAFSLSSFSFKQRQSNIRTDQVGKSTHRCLV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2449 291 Pfam Major intrinsic protein 43 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g2449 291 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Apr4g2449 291 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g2449 291 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g2449 291 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g2449 291 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g2449 291 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g2449 291 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr4g2449 291 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 34 280 - -
Apr4g2449 291 SUPERFAMILY Aquaporin-like 38 261 IPR023271 -
Apr4g2449 291 Gene3D Glycerol uptake facilitator protein. 13 263 IPR023271 -
Apr4g2449 291 PANTHER AQUAPORIN NIP2-1 34 280 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2449 Apr-Chr4 33449456 33453113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2449 45 260 Major Intrinsic Protein MIP AT5G37820 46.544 1.72e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2449 K09874 - gmx:100788071 384.03