Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2448 ATGGGAGATCATGTCACTATCTCTGCTGAGATATTTCAGGGAACTCGAGGCCAAGGATCCTTGACTACTCAACACCACATTGCAATCCCCATAGAAGAATTTAGTGCATCCCAGAAAGCTTCAAAGGACAAGAGGCCTGTTACGGATGACAATGTCCAAAATCCTGAAGAATGTTGTGAAGAATCTCAAGAAGATATGAGAGAATGCCGCTATTGTCACGAGGAAGACTTTGTTTCTAAACTGGAAACACCATGCTCTTGCAATGGCAGCTTGAGGTATGTTCACAAGAACTGCATTGACCAATGGTACCATTCCAAAGGCAGCATGATCTGTGAGATTTGCAAGCAGCGTTACCATCCAAATTATACAGTTCCGGAACCCATTTATTCTTCTTCTGATGAGACAGAGATAAGTGAGGAATGGACGTTTCCTGGAACAAACACTCAAATCCAAGCACCACTGTTGGTGGTAGAGCGTGCCACCAATGGCCTCATTGAATCGATGAATAAAGACTTCACCTTGAGAAATCCCAGTGGAGGAGTGATATTTGGAACAGCACTCCTCATTTTTATGGCAGTGCTAGTTGTTAAGGATGCTTATAACTATGCTCCACCGAGGGATGACAAAGTTGGTCACACTTTGTACTGGAATATGTCACTTTCTGCGCTGTTCTTGACAGTGTAA 684 0.4342 MGDHVTISAEIFQGTRGQGSLTTQHHIAIPIEEFSASQKASKDKRPVTDDNVQNPEECCEESQEDMRECRYCHEEDFVSKLETPCSCNGSLRYVHKNCIDQWYHSKGSMICEICKQRYHPNYTVPEPIYSSSDETEISEEWTFPGTNTQIQAPLLVVERATNGLIESMNKDFTLRNPSGGVIFGTALLIFMAVLVVKDAYNYAPPRDDKVGHTLYWNMSLSALFLTV* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2448 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 127 IPR013083 -
Apr4g2448 227 SUPERFAMILY RING/U-box 64 119 - -
Apr4g2448 227 MobiDBLite consensus disorder prediction 37 51 - -
Apr4g2448 227 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 218 IPR033275 -
Apr4g2448 227 SMART ringv_2 68 115 IPR011016 GO:0008270
Apr4g2448 227 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 218 - -
Apr4g2448 227 Pfam Protein of unknown function (DUF3675) 120 202 IPR022143 -
Apr4g2448 227 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
Apr4g2448 227 MobiDBLite consensus disorder prediction 33 55 - -
Apr4g2448 227 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2448 55 114 C3H Transcription Factor Family AT5G05830 37.879 1.20e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2448 - - aprc:113862531 476.863