Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2446 ATGGACATAACCCCAACAACAACGATCAACAACACTCCCACGAGTGCAACAAAATCCCCAGAACATGACACCGAAACTCCGACCAGAATCACCACCACCGCCACAACAACCAACAAACCCTTGTCTTTCTCCAACGGCGTCCTCAAGCGCCACCCTTACCCTCACCACCACCACCATCACCCCCACCCCATGGCCACCACTAACCACCCAGTTCCAGTCACCTACAAAGAATGTCTCAAAAATCATGCCGCCAACTTAGGTGGCCACGCCTTAGACGGTTGCGGCGAGTTCATGCCTTCCCCCAACGCCACCGCCGCAGACCCAAGTTCCATAAAATGCGCCGCCTGCGGCTGCCACCGCAATTTCCACCGCCGGGAACCGGAAGAACCACCCATCTCCTCAACCACCCACGTCATCGAGTACCAACCCCACCACCGCCACCACCCTCCGCCGCCACCGTTCCAAGCCTCGAATCGCAGCCCCAATTCGGCGTCTCCGCCACCGATCTCCTCCTCTTACTACCCTTCCGCACCGCACATGCTCCTCTCCCTCTCCACCGGCCTGGCGCCGCCGCCGGAAAGCACGGCTGCACCCTCCGGCGCGTTGGCCTCACCTGGGTCCCACACAAGGAAGCGATTTAGAACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCATAGGTTCGCAGAGAGAGTTGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGGTTCAAGAGTTTTGCAACGAGGTTGGGGTCGATAGAGGAGTGCTTAAGGTTTGGATGCATAACAATAAGAACACTCTTGCCAAAAAAGATAATAATAATAGTATTATTAATAATGATAATAATAATGCCAATGGCGGTGACAAGAGCTTTGAAGACCCTAACAACGCCAACAACGACGATGACGCTGAAATCAATGGCAACGATCGTGCTGAGGATCCAACTCGTCATCACTATGGTGGCCCCAACGTTGCTGCTAATGGATCTTCTTCTTCTTCTTGA 1008 0.5397 MDITPTTTINNTPTSATKSPEHDTETPTRITTTATTTNKPLSFSNGVLKRHPYPHHHHHHPHPMATTNHPVPVTYKECLKNHAANLGGHALDGCGEFMPSPNATAADPSSIKCAACGCHRNFHRREPEEPPISSTTHVIEYQPHHRHHPPPPPFQASNRSPNSASPPPISSSYYPSAPHMLLSLSTGLAPPPESTAAPSGALASPGSHTRKRFRTKFSQEQKEKMHRFAERVGWKMQKRDEDLVQEFCNEVGVDRGVLKVWMHNNKNTLAKKDNNNSIINNDNNNANGGDKSFEDPNNANNDDDAEINGNDRAEDPTRHHYGGPNVAANGSSSSS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2446 335 MobiDBLite consensus disorder prediction 1 67 - -
Apr4g2446 335 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 74 126 IPR006456 -
Apr4g2446 335 MobiDBLite consensus disorder prediction 142 172 - -
Apr4g2446 335 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 289 - -
Apr4g2446 335 MobiDBLite consensus disorder prediction 270 335 - -
Apr4g2446 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 289 - -
Apr4g2446 335 MobiDBLite consensus disorder prediction 270 295 - -
Apr4g2446 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 75 126 IPR006456 -
Apr4g2446 335 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 210 267 IPR006455 -
Apr4g2446 335 Pfam ZF-HD protein dimerisation region 73 127 IPR006456 -
Apr4g2446 335 MobiDBLite consensus disorder prediction 305 319 - -
Apr4g2446 335 Gene3D - 197 272 - -
Apr4g2446 335 SUPERFAMILY Homeodomain-like 201 271 IPR009057 -
Apr4g2446 335 MobiDBLite consensus disorder prediction 1 44 - -
Apr4g2446 335 MobiDBLite consensus disorder prediction 184 222 - -
Apr4g2446 335 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2446 Apr-Chr4 33410466 33412288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2446 1 295 ZF-HD Transcription Factor Family AT3G28920 54.545 3.47e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr4g2446 ZF-HD_dimer 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2446 - - gmx:100786999 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0199 6 2084043 2085663 Apr4g2446 4 33410466 33412288 PCT