Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2445 ATGAGGAAGCGACAAGTGGTTGTGAGAAGGGAAGAACCTTCAAGAAACACAAGCAATTCAGCAGTGACAGTGAGAAACGTGAGGTATGCTGAGTGCCAGAAGAATCATGCAGTCAGTCATGGAGGACATGCTGTTGATGGTTGCAGGGAGTTCATGGCAAATGGCACTGAAGGAGCCGCTCTTCTGACTTGTGCTGCTTGTGGCTGCCACAGGAACTTCCATAAGAGGGAGGTTGAGACTGAAGTCACTTGTGACTGCTCTTCACCTCCTTCCGTTTCTGGAACTTGA 288 0.4931 MRKRQVVVRREEPSRNTSNSAVTVRNVRYAECQKNHAVSHGGHAVDGCREFMANGTEGAALLTCAACGCHRNFHKREVETEVTCDCSSPPSVSGT* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2445 95 Pfam ZF-HD protein dimerisation region 26 78 IPR006456 -
Apr4g2445 95 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 28 78 IPR006456 -
Apr4g2445 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 77 IPR006456 -
Apr4g2445 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 92 - -
Apr4g2445 95 PANTHER MINI ZINC FINGER PROTEIN 6 92 - -
Apr4g2445 95 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2445 Apr-Chr4 33392982 33393269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2445 1 91 Zinc finger-homeobox gene family AT3G28917 67.010 7.16e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr4g2445 ZF-HD_dimer 6.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2445 - - dzi:111292097 155.992