Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2444 ATGGGAAGGCCACCTTGTTGTGATAAAGAAGGGGTCAAGAAAGGGCCATGGACTCCTGAAGAAGATATCATATTGGTGTCTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCAGTTCCTACCAAGACAGGGTTATCAAGATGCAGTAAGAGTTGCAGACTTCGATGGACGAATTACCTGAGGCCAGGAATCAAACGGGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCTTCATACCTCCCACAGAGAACAGATAATGACATAAAAAATTATTGGAACACTCACTTGAAAAAGAAGCTCAAGAAAATGCAAACAGGTTGTGATGGTACTTTGGGAGACGGGTTTTCAGCATCAAGGCAAACTCCTAGAGGTCAGTGGGAAAGAAGGCTTCAAACTGATATTCAAATGGCAAAGAGGGCTCTCAGTGAAGCTCTTTCACCAGAGAAGCCATCTTCTTTATCTGCTTCAAACCCCTCTAATAGTAGCTCCTTCTCTTCCACCAAACCAACCCAATCTTTGTGCTATGCTTCAAGTGCAGATAACATAGCTCGTTTGCTGAAGGGTTGGATGAAAAATCCACCAAAGTCCTCAAGAACTAACTCAGCTGTGACTCAAAACTCCTTCAACAACTTAGCTGCCGCCGGAGCTGATACTGCCTCTAGTGAAGCAAAGGGATCAAACAGTGGTGAATTGTCAGAGACTTTTGAGTCCTTGTTTGGCTTTGATCAGTCTTTGGAGTCTTCAAATTCTGAGTTCTCTCAATCCTTGTCACCTGAGGCGACTGTTTTGCAAGATGAAAGCAAGCCTGATATTGGTGCAGAAATAATGCCATTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGTTTGTCATGAGAAAATTAGTTGTGGTGGTGATGCCCAGTTTTTCTAA 963 0.4289 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQTGCDGTLGDGFSASRQTPRGQWERRLQTDIQMAKRALSEALSPEKPSSLSASNPSNSSSFSSTKPTQSLCYASSADNIARLLKGWMKNPPKSSRTNSAVTQNSFNNLAAAGADTASSEAKGSNSGELSETFESLFGFDQSLESSNSEFSQSLSPEATVLQDESKPDIGAEIMPFSLLEKWLLDEAVCHEKISCGGDAQFF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2444 320 CDD SANT 69 112 IPR001005 -
Apr4g2444 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr4g2444 320 Gene3D - 69 125 - -
Apr4g2444 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr4g2444 320 CDD SANT 16 61 IPR001005 -
Apr4g2444 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr4g2444 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr4g2444 320 SMART sant 13 63 IPR001005 -
Apr4g2444 320 SMART sant 66 114 IPR001005 -
Apr4g2444 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Apr4g2444 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Apr4g2444 320 Gene3D - 13 66 - -
Apr4g2444 320 MobiDBLite consensus disorder prediction 157 187 - -
Apr4g2444 320 MobiDBLite consensus disorder prediction 163 187 - -
Apr4g2444 320 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 313 - -
Apr4g2444 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr4g2444 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2444 Apr-Chr4 33374835 33376568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2444 1 311 MYB Transcription Factor Family AT5G62470 53.352 5.32e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g2444 Myb_DNA-binding 6.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2444 K09422 - gmx:778080 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0197 6 2016227 2017837 Apr4g2444 4 33374835 33376568 PCT