Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2442 ATGGTGCAGAGACTAACTTATCGGAAGCGTCACAGTTATGCTACCAAATCCAACCAACACCGGGTTGTTAAAACTCCTGGTGGAAAGTTGGTGTACCAGAGCACTAAGAAGAGAGCAAGTGGACCAAAATGCCCTGTCACTGGGAAGAGGATCCAAGGGATTCCACACTTGAGACCAGCTGAATACAAGAGATCTAGATTGTCTAGGAACCGCAGGACAGTAAACAGGGCCTATGGAGGTGTATTATCTGGAGGAGCCGTTAGAGAAAGGATTATCCGTGCTTTCCTCGTTGAGGAGCAAAAGATTGTGAAGAAGGTATTGAAGATTCAGAAGGCTAAAGAAAAGCAAGCATCCAAGAGTTAA 363 0.4545 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2442 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr4g2442 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr4g2442 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr4g2442 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr4g2442 120 Gene3D - 39 120 - -
Apr4g2442 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Apr4g2442 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 120 IPR008195 GO:0003735|GO:0005840|GO:0006412
Apr4g2442 120 Gene3D - 1 37 - -
Apr4g2442 120 PANTHER - 1 120 - -
Apr4g2442 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2442 Apr-Chr4 33357300 33359661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2442 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 91.597 2.69e-76 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2442 K02915 - csin:114306910 217.624