Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2441 ATGTCTAGCCGAAGGTCCAGGCACCAATCGGGTTCTACAAGGATCTCTGATGACCAAATCATCGACCTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGCAATAGGCGATCTGACAAGGTTTCAGCGTCTAAGGTCCTACAAGAAACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGGAGGACTTAAGTGAGAGGTTGTCTCAGTTGTTGACCACAATTGATGCTGATAGTGCTGAGGCTGGTATCATTAGAAGCCTACTTAATCAATAA 279 0.4552 MSSRRSRHQSGSTRISDDQIIDLVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRSLHREVEDLSERLSQLLTTIDADSAEAGIIRSLLNQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2441 92 Coils Coil 55 75 - -
Apr4g2441 92 CDD bHLH_AtPRE_like 9 75 - -
Apr4g2441 92 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Apr4g2441 92 Gene3D - 2 83 IPR036638 GO:0046983
Apr4g2441 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Apr4g2441 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 77 IPR036638 GO:0046983
Apr4g2441 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Apr4g2441 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2441 Apr-Chr4 33337960 33338940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2441 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 3.65e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g2441 HLH 2.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2441 - - gmx:100796852 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0189 6 1895836 1897432 Apr4g2441 4 33337960 33338940 PCT