Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2438 ATGGCCTTCCCACCAACTTCTCAAGCATTCATGTTTAACACTCATGAAGAAGTTCATCACCACTTCCCTTCAACCTCCCTCAATGCTCTCCCCTCTTTGCCACCCCAACACTTTCAAGGTGGTGCACCTTTCGTGTTGAAGCGATCCATGTCGTTTTCAGGGATTGAAAACAAGTGTGATGATGGAGAGGAGGAGTTATCAGATGATGGGTTGTTGCAGTGTGGAGAGAAAAAGAAGAGGTTGAATTTAGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGAAACAAGCTTGAGCCAGAAAGGAAAGACCAACTGGCTAAGGCTTTGGGCTTGCAACCAAGACAAATCGCCATTTGGTTTCAGAATAGGAGGGCAAGGTGGAAAACCAAGCAATTGGAGAAGGAATATAAACTCCTCAAGATGCACTTTGAAGCCGTTAAGGCTGAAAATGAGGCTCTTAAGGCTCAGAACAAGAAATTACACGCAGAGTTACAAGCTCTAAAGGGTAGGGATTGGTGTGAAGCTGGAACAATCAAGAAAGAAGCTGAGTGTTCTTGGAGCAATGGAAGTGATAACAGTTCAGACATTAACTTAGATCTCTCAAGAACACCGGTTTTAAACAGTCATGTATCTTTTCAGAAGGATAAAAGCCTTCTACCCTCTTCCTTGAAGCCCACCAGCATGACCCAATTCCTTCAGGATGAAGGCTTCTGCAACATGTTTCACAACATTGATGAGCAACAAAACTTTTGGCCTTGGCCTGATCAGGAGCATCATTTCCATTGA 792 0.4394 MAFPPTSQAFMFNTHEEVHHHFPSTSLNALPSLPPQHFQGGAPFVLKRSMSFSGIENKCDDGEEELSDDGLLQCGEKKKRLNLEQVKALEKSFELGNKLEPERKDQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYKLLKMHFEAVKAENEALKAQNKKLHAELQALKGRDWCEAGTIKKEAECSWSNGSDNSSDINLDLSRTPVLNSHVSFQKDKSLLPSSLKPTSMTQFLQDEGFCNMFHNIDEQQNFWPWPDQEHHFH* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2438 263 SUPERFAMILY Homeodomain-like 75 134 IPR009057 -
Apr4g2438 263 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 263 - -
Apr4g2438 263 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Apr4g2438 263 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Apr4g2438 263 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Apr4g2438 263 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Apr4g2438 263 Gene3D - 73 139 - -
Apr4g2438 263 CDD homeodomain 77 133 IPR001356 GO:0003677
Apr4g2438 263 Coils Coil 131 172 - -
Apr4g2438 263 Pfam Homeobox associated leucine zipper 132 171 IPR003106 GO:0006355|GO:0043565
Apr4g2438 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 263 IPR045224 GO:0003700
Apr4g2438 263 SMART HOX_1 75 136 IPR001356 GO:0003677
Apr4g2438 263 Pfam Homeodomain 77 130 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2438 Apr-Chr4 33300027 33301895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2438 1 257 Homeobox Transcription Factor Family AT5G15150 52.349 2.14e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr4g2438 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2438 K09338 - gmx:100797920 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0187 6 1845658 1847911 Apr4g2438 4 33300027 33301895 PCT