Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2421 ATGGCAACGATGAAAGAGAACGAAGTGAATCTTGGAAAGAGTAGAATGTCCATGGCAGAAGGTGAGTTCCAAGTAGCAAGGTGTGTCAAGAGAAGACGAAGAGAGGCTGCTGCAGAAAATAGTGGTGATCATAATCATCAGCAGCAGCTGCCACAAGTTGGTGAAAATTCTACAATCAACACTACAAAAAGAAGCTCAAAATTTCGTGGTGTTAGCAGACATAGATGGACGGGTCGATTTGAAGCTCACTTGTGGGACAAGCTCTCTTGGAACATAACACAAAAGAAGAAAGGAAAGCAAGGGGCTTATGATGAGGAAGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAATATTGGGGAACATCCACTTTCACCAATTTTCCGATATCAGATTATGAGAAAGAGGTAGAAATAATGCAGACTATGACCAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGGGTGTCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGGATAGGAAGGGTTTTTGGAAACAAATATCTCTATCTTGGCACCTACAGCACCCAAGAGGAAGCTGCACGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGATTCATGCTGTAACAAACTTTGATTTGAGCACTTACATCAAATGGTTAAAGCCTGCAGGAACAAGCACCACAGAAACAAAACTTGAATCACAGGCAGCACTAGAATCTCAAACAGTTGCATCCCCATCTAACTATGCTCCAATAGAAGAGTCAAAATCTTTGACCCTTCACACCAGTTTTTTCAGTCCAGATACCATAAATTCCCCTGTAAAGCAAGAAAACTTTGGAAACAACGCCTACCAATTCTCGAGCAATAAGTCATCTTCTCCCACTGCTCTTGGCCTTCTTCTCCGCTCTTCGTTGTTTAGAGAATTGGTTGAAAAGAATTCAAATGTAGGCGGAGTCAGCGGAGATGAAGCTGATGGAGAAGTCACAAAGGATCAACAGGCACAACTAGCTAGTGATGATGATCTGGGTGGAATATTCTATGATAGCATTGGTGATATCCCATTTGTCTGCGATCCTAATAGATACAACTTGGAATTGGAAGAAAGAGACCTGCACTCAATATTTTGA 1164 0.4244 MATMKENEVNLGKSRMSMAEGEFQVARCVKRRRREAAAENSGDHNHQQQLPQVGENSTINTTKRSSKFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEVEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIKWLKPAGTSTTETKLESQAALESQTVASPSNYAPIEESKSLTLHTSFFSPDTINSPVKQENFGNNAYQFSSNKSSSPTALGLLLRSSLFRELVEKNSNVGGVSGDEADGEVTKDQQAQLASDDDLGGIFYDSIGDIPFVCDPNRYNLELEERDLHSIF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2421 387 Pfam AP2 domain 165 216 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 Pfam AP2 domain 66 122 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 SUPERFAMILY DNA-binding domain 66 132 IPR016177 GO:0003677
Apr4g2421 387 ProSiteProfiles AP2/ERF domain profile. 166 224 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 6 362 - -
Apr4g2421 387 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 362 - -
Apr4g2421 387 SUPERFAMILY DNA-binding domain 165 226 IPR016177 GO:0003677
Apr4g2421 387 CDD AP2 66 132 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 CDD AP2 165 226 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 PRINTS Ethylene responsive element binding protein signature 206 226 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 ProSiteProfiles AP2/ERF domain profile. 67 130 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 Gene3D AP2/ERF domain 66 132 IPR036955 GO:0003700|GO:0006355
Apr4g2421 387 Gene3D AP2/ERF domain 165 226 IPR036955 GO:0003700|GO:0006355
Apr4g2421 387 MobiDBLite consensus disorder prediction 42 66 - -
Apr4g2421 387 SMART rav1_2 166 230 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 SMART rav1_2 67 136 IPR001471 GO:0003700|GO:0006355
Apr4g2421 387 MobiDBLite consensus disorder prediction 34 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2421 Apr-Chr4 33178864 33181679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2421 63 301 AP2-EREBP Transcription Factor Family AT5G57390 51.953 3.88e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Apr4g2421 AP2 7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2421 - - gmx:100792612 648.662